ENSMUSG00000046080


Mus musculus

Features
Gene ID: ENSMUSG00000046080
  
Biological name :Clec9a
  
Synonyms : Clec9a / C-type lectin domain family 9 member A / Q8BRU4
  
Possible biological names infered from orthology : C-type lectin domain containing 9A / Q6UXN8
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: F3
Gene start: 129408862
Gene end: 129424763
  
Corresponding Affymetrix probe sets: 10542181 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000056625
Ensembl peptide - ENSMUSP00000085394
Ensembl peptide - ENSMUSP00000128622
Ensembl peptide - ENSMUSP00000144990
NCBI entrez gene - 232414     See in Manteia.
MGI - MGI:2444608
RefSeq - NM_001205364
RefSeq - NM_001205363
RefSeq - NM_001205365
RefSeq - NM_172732
RefSeq Peptide - NP_001192292
RefSeq Peptide - NP_001192293
RefSeq Peptide - NP_001192294
RefSeq Peptide - NP_766320
swissprot - Q8BRU4
Ensembl - ENSMUSG00000046080
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLEC9AENSG00000197992Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Clec1b / Q9JL99 / C-type lectin domain family 1 member B / Q9P126*ENSMUSG0000003015922
Clec1a / Q8BWY2 / C-type lectin domain family 1 member A / Q8NC01*ENSMUSG0000003308222
Clec12b / C-type lectin domain family 12 member B / Q2HXU8*ENSMUSG0000003015821
Clec7a / Q6QLQ4 / Mus musculus C-type lectin domain family 7, member a (Clec7a), transcript variant 1, coding, mRNA. / Q9BXN2* / C-type lectin domain containing 7A*ENSMUSG0000007929320
Clec12a / Q5QGZ9* / C-type lectin domain family 12 member A*ENSMUSG0000005306317
Olr1 / Q9EQ09 / Oxidized low-density lipoprotein receptor 1 Oxidized low-density lipoprotein receptor 1, soluble form / P78380* / oxidized low density lipoprotein receptor 1*ENSMUSG0000003016217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site
 IPR033992  Natural killer cell receptor-like, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006898 receptor-mediated endocytosis ISS
 biological_processGO:0050715 positive regulation of cytokine secretion ISS
 cellular_componentGO:0009986 cell surface ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001800 abnormal humoral immune response "abnormal immune function mediated by antibodies" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Nhlrc1tm1Bmin/Nhlrc1tm1Bmin
Genetic Background: involves: 129S6/SvEvTac * C57BL/6 * C57BL/6NCr

 MP:0002455 abnormal dendritic cell antigen presentation "impairment of these specialized cells to process and present antigen to T lymphoytes" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Slc13a1tm1Mark/Slc13a1+
Genetic Background: involves: 129T2/SvEms * C57BL/6J

Allelic Composition: Clec9atm1.1Crs/Clec9atm1.1Crs
Genetic Background: C57BL/6-Clec9atm1.1Crs

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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