ENSDARG00000078226


Danio rerio

Features
Gene ID: ENSDARG00000078226
  
Biological name :cdh12a
  
Synonyms : cadherin 12, type 2a (N-cadherin 2) / cdh12a
  
Possible biological names infered from orthology : cadherin 12 / CDH12 / P55289 / Q5RJH3
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 28995776
Gene end: 29116892
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114471
NCBI entrez gene - 568508     See in Manteia.
RefSeq - NM_001159830
RefSeq Peptide - NP_001153302
swissprot - B0V236
ZFIN ID - ZDB-GENE-070912-673
Ensembl - ENSDARG00000078226
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH12ENSGALG00000012941Gallus gallus
 CDH12ENSG00000154162Homo sapiens
 Cdh12ENSMUSG00000040452Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdh10a / cadherin 10, type 2a (T2-cadherin) / CDH6* / CDH9* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000005584352
cdh7a / cadherin 7a / CDH7* / Q8BM92* / Q9ULB5* / cadherin 7*ENSDARG0000002354251
CDH18 / cadherin 18 / Q13634*ENSDARG0000010276951
cdh6 / cadherin 6 / CDH9* / CDH10* / Q9Y6N8* / P97326* / Q9ULB4* / P55285* / P70408* / cadherin 9* / cadherin 10*ENSDARG0000001452250
cdh11 / cadherin 11, type 2, OB-cadherin (osteoblast) / P55287* / P55288* / cadherin 11*ENSDARG0000002144249
CDH22 / cadherin 22 / Q9UJ99*ENSDARG0000009882445
LO017650.1 / CDH9* / CDH6* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000010390342
cdh24b / cadherin 24, type 2b / CDH24* / Q6PFX6* / Q86UP0* / cadherin 24*ENSDARG0000007799641
CABZ01109081.1 / CDH19* / Q9H159* / cadherin 19*ENSDARG0000010059836
cdh7b / cadherin 7b / CDH7* / Q9ULB5* / cadherin 7*ENSDARG0000001764933


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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