ENSGALG00000012407


Gallus gallus

Features
Gene ID: ENSGALG00000012407
  
Biological name :LRP1B
  
Synonyms : LDL receptor related protein 1B / LRP1B
  
Possible biological names infered from orthology : Q9NZR2
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 32016417
Gene end: 32446623
  
Corresponding Affymetrix probe sets: GgaAffx.7866.1.S1_at (Chicken Array)   GgaAffx.7866.2.S1_s_at (Chicken Array)   GgaAffx.7866.4.S1_s_at (Chicken Array)   GgaAffx.7866.5.S1_s_at (Chicken Array)   GgaAffx.7866.6.S1_s_at (Chicken Array)   GgaAffx.7866.7.S1_s_at (Chicken Array)   GgaAffx.7866.8.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020245
Ensembl peptide - ENSGALP00000050923
Ensembl peptide - ENSGALP00000044587
NCBI entrez gene - 424301     See in Manteia.
RefSeq - XM_004943007
RefSeq - XM_015289890
RefSeq - XM_015289891
RefSeq - XM_422146
swissprot - A0A1D5NW51
swissprot - F1NCT3
swissprot - A0A1D5PDS7
Ensembl - ENSGALG00000012407
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrp1baENSDARG00000004789Danio rerio
 lrp1bbENSDARG00000061517Danio rerio
 LRP1BENSG00000168702Homo sapiens
 Lrp1bENSMUSG00000049252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRP2 / LDL receptor related protein 2 / A2ARV4* / P98164* / low density lipoprotein receptor-related protein 2*ENSGALG0000001085834
LRP4 / LDL receptor related protein 4 / O75096* / Q8VI56* / Low-density lipoprotein receptor-related protein 4 *ENSGALG0000003218114
LRP5 / low-density lipoprotein receptor-related protein 5 precursor / O75197* / Q91VN0* / LDL receptor related protein 5* / Low-density lipoprotein receptor-related protein 5 *ENSGALG0000002953311
LRP6 / LDL receptor related protein 6 / O75581*ENSGALG0000003150311
Gm19410*ENSGALG000000231728
VLDLR / P98165 / Very low-density lipoprotein receptor / P98155* / P98156*ENSGALG000000101667
LRP8 / low-density lipoprotein receptor-related protein 8 precursor / Q14114* / Q924X6* / LDL receptor related protein 8* / Low-density lipoprotein receptor-related protein 8 *ENSGALG000000106927


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR032485  Domain of unknown function DUF5050


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043235 receptor complex IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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