ENSDARG00000000229


Danio rerio

Features
Gene ID: ENSDARG00000000229
  
Biological name :usp49
  
Synonyms : ubiquitin specific peptidase 49 / usp49
  
Possible biological names infered from orthology : Q6P9L4 / Q70CQ1
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 567733
Gene end: 584610
  
Corresponding Affymetrix probe sets: Dr.13979.1.A1_at (Zebrafish Array)   NM_001044896_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000036071
Ensembl peptide - ENSDARP00000133726
NCBI entrez gene - 559473     See in Manteia.
RefSeq - NM_001044896
RefSeq Peptide - NP_001038361
swissprot - Q1MTK1
ZFIN ID - ZDB-GENE-050208-484
Ensembl - ENSDARG00000000229
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044132Gallus gallus
 ENSGALG00000003461Gallus gallus
 USP49ENSG00000164663Homo sapiens
 Usp49ENSMUSG00000090115Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp44 / ubiquitin specific peptidase 44 / Q9H0E7*ENSDARG0000008986158
usp3 / ubiquitin specific peptidase 3 / Q91W36* / Q9Y6I4*ENSDARG0000004564125
usp22 / A6H8I0 / ubiquitin specific peptidase 22 / USP51* / Q70EK9* / Q8CEG8* / Q9UPT9* / B1AY15* / Q5DU02* / A6NNY8* / USP27X* / ubiquitin specific protease 51* / ubiquitin specific peptid...ENSDARG0000004040722
usp42 / ubiquitin specific peptidase 42 / B2RQC2* / Q9H9J4*ENSDARG0000007730018
usp36 / ubiquitin specific peptidase 36 / B1AQJ2* / Q9P275*ENSDARG0000003232716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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