ENSDARG00000040407


Danio rerio

Features
Gene ID: ENSDARG00000040407
  
Biological name :usp22
  
Synonyms : A6H8I0 / ubiquitin specific peptidase 22 / usp22
  
Possible biological names infered from orthology : A6NNY8 / B1AY15 / Q5DU02 / Q70EK9 / Q8CEG8 / Q9UPT9 / ubiquitin specific peptidase 27, X chromosome / ubiquitin specific peptidase 27, X-linked / ubiquitin specific peptidase 51 / ubiquitin specific protease 51 / USP27X / USP51
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 1469090
Gene end: 1526051
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126663
Ensembl peptide - ENSDARP00000149572
Ensembl peptide - ENSDARP00000059142
NCBI entrez gene - 692275     See in Manteia.
RefSeq - NM_001045248
RefSeq Peptide - NP_001038713
swissprot - A6H8I0
swissprot - F1QXG0
ZFIN ID - ZDB-GENE-060512-211
Ensembl - ENSDARG00000040407
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000029817Gallus gallus
 A6NNY8ENSG00000273820Homo sapiens
 USP22ENSG00000124422Homo sapiens
 USP51ENSG00000247746Homo sapiens
 Q8CEG8ENSMUSG00000046269Mus musculus
 Usp22ENSMUSG00000042506Mus musculus
 Usp51ENSMUSG00000067215Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp49 / ubiquitin specific peptidase 49 / Q6P9L4* / Q70CQ1*ENSDARG0000000022928
usp44 / ubiquitin specific peptidase 44 / Q9H0E7*ENSDARG0000008986128
usp3 / ubiquitin specific peptidase 3 / Q91W36* / Q9Y6I4*ENSDARG0000004564127
usp36 / ubiquitin specific peptidase 36 / B1AQJ2* / Q9P275*ENSDARG0000003232722
usp42 / ubiquitin specific peptidase 42 / B2RQC2* / Q9H9J4*ENSDARG0000007730022


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0016579 protein deubiquitination IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain bulbous , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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