ENSDARG00000002344


Danio rerio

Features
Gene ID: ENSDARG00000002344
  
Biological name :tubb4b
  
Synonyms : tubb4b / tubulin, beta 4B class IVb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 5861435
Gene end: 5865146
  
Corresponding Affymetrix probe sets: Dr.5605.1.S1_a_at (Zebrafish Array)   Dr.5605.2.S1_x_at (Zebrafish Array)   NM_198809_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000139366
Ensembl peptide - ENSDARP00000041278
NCBI entrez gene - 336681     See in Manteia.
RefSeq - NM_198809
RefSeq Peptide - NP_942104
swissprot - A0A0R4IXL7
swissprot - Q6P5M9
ZFIN ID - ZDB-GENE-030131-8625
Ensembl - ENSDARG00000002344
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:55461 / P04350* / Q9D6F9* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000004172399
tubb2b / tubulin, beta 2b / Q9D6F9* / P04350* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000009859199
zgc:153426ENSDARG0000010443698
zgc:65894ENSDARG0000001630198
tubb5 / tubulin, beta 5 / TUBB* / P99024* / P07437* / tubulin beta class I* / tubulin, beta 5 class I*ENSDARG0000003799797
tubb2 / tubulin, beta 2A class IIa / Q9BVA1* / Q9CWF2* / Q13885* / TUBB2A* / TUBB2B* / Q7TMM9* / tubulin beta 2B class IIb*ENSDARG0000003952294
tubb6 / tubulin, beta 6 class V / Q922F4* / Q9BUF5*ENSDARG0000010480191
tubb1 / tubulin, beta 1 class VI / A2AQ07* / Q9H4B7*ENSDARG0000005306684
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000004398234
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000009662034
tubd1 / tubulin, delta 1 / Q9R1K7* / Q9UJT1*ENSDARG0000005821924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002453  Beta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR013838  Beta tubulin, autoregulation binding site
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
Show

 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ cilium morphology , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
Show

 ZFA:0001617 otolith otolith malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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