ENSDARG00000039522


Danio rerio

Features
Gene ID: ENSDARG00000039522
  
Biological name :tubb2
  
Synonyms : tubb2 / tubulin, beta 2A class IIa
  
Possible biological names infered from orthology : Q13885 / Q7TMM9 / Q9BVA1 / Q9CWF2 / TUBB2A / TUBB2B / tubulin beta 2B class IIb
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 2010277
Gene end: 2020044
  
Corresponding Affymetrix probe sets: Dr.7928.1.A1_at (Zebrafish Array)   NM_001024422_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000021016
NCBI entrez gene - 554127     See in Manteia.
RefSeq - NM_001024422
RefSeq Peptide - NP_001019593
swissprot - F1QKY8
ZFIN ID - ZDB-GENE-050522-384
Ensembl - ENSDARG00000039522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q13885ENSG00000137267Homo sapiens
 Q9BVA1ENSG00000137285Homo sapiens
 Q7TMM9ENSMUSG00000058672Mus musculus
 Q9CWF2ENSMUSG00000045136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:55461 / P04350* / Q9D6F9* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000004172393
zgc:153426ENSDARG0000010443693
tubb5 / tubulin, beta 5 / TUBB* / P99024* / P07437* / tubulin beta class I* / tubulin, beta 5 class I*ENSDARG0000003799793
tubb4b / tubulin, beta 4B class IVbENSDARG0000000234493
zgc:65894ENSDARG0000001630193
tubb2b / tubulin, beta 2b / Q9D6F9* / P04350* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000009859193
tubb6 / tubulin, beta 6 class V / Q922F4* / Q9BUF5*ENSDARG0000010480189
tubb1 / tubulin, beta 1 class VI / A2AQ07* / Q9H4B7*ENSDARG0000005306681
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000009662033
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000004398233
tubd1 / tubulin, delta 1 / Q9R1K7* / Q9UJT1*ENSDARG0000005821923


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002453  Beta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR013838  Beta tubulin, autoregulation binding site
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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