ENSDARG00000104801


Danio rerio

Features
Gene ID: ENSDARG00000104801
  
Biological name :tubb6
  
Synonyms : tubb6 / tubulin, beta 6 class V
  
Possible biological names infered from orthology : Q922F4 / Q9BUF5
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 2941000
Gene end: 2947406
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000133963
Ensembl peptide - ENSDARP00000140249
NCBI entrez gene - 550458     See in Manteia.
RefSeq - NM_001017762
RefSeq - NM_001328501
RefSeq Peptide - NP_001017762
RefSeq Peptide - NP_001315430
swissprot - A0A0R4IJU3
swissprot - A0A0R4IXC8
ZFIN ID - ZDB-GENE-070424-195
Ensembl - ENSDARG00000104801
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TUBB6ENSGALG00000031275Gallus gallus
 TUBB6ENSG00000176014Homo sapiens
 Tubb6ENSMUSG00000001473Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tubb4b / tubulin, beta 4B class IVbENSDARG0000000234490
zgc:55461 / P04350* / Q9D6F9* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000004172390
zgc:153426ENSDARG0000010443690
tubb2b / tubulin, beta 2b / Q9D6F9* / P04350* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000009859189
tubb2 / tubulin, beta 2A class IIa / Q9BVA1* / Q9CWF2* / Q13885* / TUBB2A* / TUBB2B* / Q7TMM9* / tubulin beta 2B class IIb*ENSDARG0000003952289
zgc:65894ENSDARG0000001630189
tubb5 / tubulin, beta 5 / TUBB* / P99024* / P07437* / tubulin beta class I* / tubulin, beta 5 class I*ENSDARG0000003799789
tubb1 / tubulin, beta 1 class VI / A2AQ07* / Q9H4B7*ENSDARG0000005306683
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000004398232
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000009662032
tubd1 / tubulin, delta 1 / Q9R1K7* / Q9UJT1*ENSDARG0000005821922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002453  Beta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR013838  Beta tubulin, autoregulation binding site
 IPR017975  Tubulin, conserved site
 IPR018316  Tubulin/FtsZ, 2-layer sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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