ENSDARG00000058219


Danio rerio

Features
Gene ID: ENSDARG00000058219
  
Biological name :tubd1
  
Synonyms : tubd1 / tubulin, delta 1
  
Possible biological names infered from orthology : Q9R1K7 / Q9UJT1
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 17397321
Gene end: 17406056
  
Corresponding Affymetrix probe sets: Dr.13150.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121428
NCBI entrez gene - 415183     See in Manteia.
swissprot - Q6IQ78
ZFIN ID - ZDB-GENE-040625-73
Ensembl - ENSDARG00000058219
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TUBD1ENSGALG00000005173Gallus gallus
 TUBD1ENSG00000108423Homo sapiens
 Tubd1ENSMUSG00000020513Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tubb4b / tubulin, beta 4B class IVbENSDARG0000000234424
tubb2b / tubulin, beta 2b / Q9D6F9* / P04350* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000009859124
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000009662024
zgc:55461 / P04350* / Q9D6F9* / TUBB4A* / tubulin beta 4A class IVa*ENSDARG0000004172324
tube1 / tubulin, epsilon 1 / Q9D6T1* / Q9UJT0* / epsilon-tubulin 1*ENSDARG0000004398224
zgc:153426ENSDARG0000010443623
tubb1 / tubulin, beta 1 class VI / A2AQ07* / Q9H4B7*ENSDARG0000005306623
tubb2 / tubulin, beta 2A class IIa / Q9BVA1* / Q9CWF2* / Q13885* / TUBB2A* / TUBB2B* / Q7TMM9* / tubulin beta 2B class IIb*ENSDARG0000003952223
zgc:65894ENSDARG0000001630123
tubb5 / tubulin, beta 5 / TUBB* / P99024* / P07437* / tubulin beta class I* / tubulin, beta 5 class I*ENSDARG0000003799723
tubb6 / tubulin, beta 6 class V / Q922F4* / Q9BUF5*ENSDARG0000010480122


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002967  Delta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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