ENSMUSG00000020513


Mus musculus

Features
Gene ID: ENSMUSG00000020513
  
Biological name :Tubd1
  
Synonyms : Q9R1K7 / Tubd1 / tubulin, delta 1
  
Possible biological names infered from orthology : Q9UJT1
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: C
Gene start: 86544991
Gene end: 86567360
  
Corresponding Affymetrix probe sets: 10379968 (MoGene1.0st)   1421748_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103665
Ensembl peptide - ENSMUSP00000020821
Ensembl peptide - ENSMUSP00000064383
Ensembl peptide - ENSMUSP00000130621
Ensembl peptide - ENSMUSP00000130909
NCBI entrez gene - 56427     See in Manteia.
MGI - MGI:1891826
RefSeq - XM_006533800
RefSeq - NM_001199045
RefSeq - NM_001199046
RefSeq - NM_001199047
RefSeq - NM_019756
RefSeq Peptide - NP_001185974
RefSeq Peptide - NP_001185975
RefSeq Peptide - NP_001185976
RefSeq Peptide - NP_062730
swissprot - Q5SWF8
swissprot - Q8CDD3
swissprot - Q9R1K7
swissprot - F6Q5J9
Ensembl - ENSMUSG00000020513
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tubd1ENSDARG00000058219Danio rerio
 TUBD1ENSGALG00000005173Gallus gallus
 TUBD1ENSG00000108423Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tube1 / Q9D6T1 / epsilon-tubulin 1 / Q9UJT0* / tubulin epsilon 1*ENSMUSG0000001984524
P68372 / Tubb4b / tubulin, beta 4B class IVB / P68371*ENSMUSG0000003675222
Tubb3 / Q9ERD7 / tubulin, beta 3 class III / Q13509*ENSMUSG0000006238021
Q9D6F9 / Tubb4a / tubulin, beta 4A class IVA / P04350*ENSMUSG0000006259121
Q7TMM9 / Tubb2a / tubulin, beta 2A class IIA / Q13885*ENSMUSG0000005867221
Q9CWF2 / Tubb2b / tubulin, beta 2B class IIB / Q9BVA1*ENSMUSG0000004513621
Tubb5 / P99024 / tubulin, beta 5 class I / TUBB* / P07437* / tubulin beta class I*ENSMUSG0000000152521
Tubb6 / Q922F4 / tubulin, beta 6 class V / Q9BUF5*ENSMUSG0000000147320
Tubb1 / A2AQ07 / tubulin, beta 1 class VI / Q9H4B7*ENSMUSG0000001625520


Protein motifs (from Interpro)
Interpro ID Name
 IPR000217  Tubulin
 IPR002967  Delta tubulin
 IPR003008  Tubulin/FtsZ, GTPase domain
 IPR008280  Tubulin/FtsZ, C-terminal
 IPR017975  Tubulin, conserved site
 IPR036525  Tubulin/FtsZ, GTPase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0007017 microtubule-based process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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