ENSDARG00000004078


Danio rerio

Features
Gene ID: ENSDARG00000004078
  
Biological name :acsl4a
  
Synonyms : acsl4a / acyl-CoA synthetase long chain family member 4a
  
Possible biological names infered from orthology : ACSL4 / acyl-CoA synthetase long chain family member 4 / Long-chain-fatty-acid--CoA ligase 4 / O60488 / Q9QUJ7
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 28438947
Gene end: 28459446
  
Corresponding Affymetrix probe sets: Dr.16391.1.A1_at (Zebrafish Array)   NM_200649_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010373
Ensembl peptide - ENSDARP00000147579
NCBI entrez gene - 393622     See in Manteia.
RefSeq - NM_200649
RefSeq Peptide - NP_956943
swissprot - F1R452
ZFIN ID - ZDB-GENE-040426-1565
Ensembl - ENSDARG00000004078
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACSL4ENSGALG00000008088Gallus gallus
 ACSL4ENSG00000068366Homo sapiens
 Acsl4ENSMUSG00000031278Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
acsl3b / acyl-CoA synthetase long chain family member 3b / ACSL3* / O95573* / Q9CZW4* / Long-chain-fatty-acid--CoA ligase 3 * / acyl-CoA synthetase long chain family member 3*ENSDARG0000001467469
cwc15 / acsl4b / CWC15 spliceosome-associated protein homolog (S. cerevisiae)ENSDARG0000001075266
acsl3a / acyl-CoA synthetase long chain family member 3a / ACSL3* / O95573* / Q9CZW4* / Long-chain-fatty-acid--CoA ligase 3 * / acyl-CoA synthetase long chain family member 3*ENSDARG0000003207966
acsl1b / acyl-CoA synthetase long chain family member 1b / ACSL1* / P33121* / P41216* / Long-chain-fatty-acid--CoA ligase 1 * / acyl-CoA synthetase long chain family member 1*ENSDARG0000000385429
acsl2 / acyl-CoA synthetase long chain family member 2ENSDARG0000007839928
acsl1a / acyl-CoA synthetase long chain family member 1a / ACSL1* / P33121* / P41216* / Long-chain-fatty-acid--CoA ligase 1 * / acyl-CoA synthetase long chain family member 1*ENSDARG0000003051428
acsl5 / acyl-CoA synthetase long chain family member 5 / Q8JZR0* / Q9ULC5* / Long-chain-fatty-acid--CoA ligase 5 *ENSDARG0000007593128
acsbg2 / acyl-CoA synthetase bubblegum family member 2 / Q2XU92* / Q5FVE4* / 1700061G19Rik* / RIKEN cDNA 1700061G19 gene*ENSDARG0000000409420
acsbg1 / acyl-CoA synthetase bubblegum family member 1 / Q96GR2* / Q99PU5*ENSDARG0000006207718
LO018363.1 / ACSL6* / Q9UKU0* / AC026398.1* / acyl-CoA synthetase long chain family member 6*ENSDARG0000009964813
LO018363.2 / ACSL6* / Q9UKU0* / Q91WC3* / AC026398.1* / Long-chain-fatty-acid--CoA ligase 6 * / acyl-CoA synthetase long chain family member 6*ENSDARG000001136579


Protein motifs (from Interpro)
Interpro ID Name
 IPR000873  AMP-dependent synthetase/ligase
 IPR020459  AMP-binding
 IPR020845  AMP-binding, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0030513 positive regulation of BMP signaling pathway IMP
 biological_processGO:0051896 regulation of protein kinase B signaling IMP
 biological_processGO:1900744 regulation of p38MAPK cascade IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of very long-chain fatty acyl-CoAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism wholly dorsalized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr