ENSDARG00000010732


Danio rerio

Features
Gene ID: ENSDARG00000010732
  
Biological name :xrcc4
  
Synonyms : X-ray repair complementing defective repair in Chinese hamster cells 4 / xrcc4
  
Possible biological names infered from orthology : Q13426 / X-ray repair cross complementing 4
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 43088270
Gene end: 43184354
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000025376
Ensembl peptide - ENSDARP00000144821
Ensembl peptide - ENSDARP00000145129
NCBI entrez gene - 393759     See in Manteia.
RefSeq - NM_200786
RefSeq - XM_009305682
RefSeq Peptide - NP_957080
swissprot - Q6PBP2
ZFIN ID - ZDB-GENE-040426-1755
Ensembl - ENSDARG00000010732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XRCC4ENSGALG00000015620Gallus gallus
 XRCC4ENSG00000152422Homo sapiens
 Xrcc4ENSMUSG00000021615Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009089  XRCC4, N-terminal domain superfamily
 IPR010585  DNA repair protein XRCC4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IBA
 biological_processGO:0006310 DNA recombination IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins
Nonhomologous End-Joining (NHEJ)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000010732 xrcc4 / X-ray repair complementing defective repair in Chinese hamster cells 4 / Q13426* / X-ray repair cross complementing 4*  / complex
 ENSDARG00000044267 sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 *  / complex / reaction
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000075083 prkdc / protein kinase, DNA-activated, catalytic polypeptide / P78527* / P97313* / DNA-dependent protein kinase catalytic subunit *  / reaction
 ENSDARG00000060620 lig4 / ligase IV, DNA, ATP-dependent / P49917* / Q8BTF7* / DNA ligase 4*  / complex
 ENSDARG00000045704 Q5RGE5 / dclre1c / DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) / Q96SD1* / Q8K4J0* / Protein artemis * / DNA cross-link repair 1C*  / reaction
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000071551 xrcc6 / X-ray repair complementing defective repair in Chinese hamster cells 6 / P12956* / X-ray repair cross complementing 6*  / reaction
 ENSDARG00000099298 xrcc5 / X-ray repair complementing defective repair in Chinese hamster cells 5 / P13010* / X-ray repair cross complementing 5*  / reaction






 

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