ENSDARG00000012942


Danio rerio

Features
Gene ID: ENSDARG00000012942
  
Biological name :itgb5
  
Synonyms : integrin, beta 5 / itgb5
  
Possible biological names infered from orthology : integrin subunit beta 5 / P18084
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 22677503
Gene end: 22748015
  
Corresponding Affymetrix probe sets: Dr.17526.1.A1_at (Zebrafish Array)   NM_001082836_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000092532
Ensembl peptide - ENSDARP00000117973
Ensembl peptide - ENSDARP00000116261
Ensembl peptide - ENSDARP00000074455
NCBI entrez gene - 563556     See in Manteia.
RefSeq - NM_001082836
RefSeq Peptide - NP_001076305
swissprot - F1Q7R1
swissprot - B0UY74
swissprot - F1QF91
swissprot - B0UY54
ZFIN ID - ZDB-GENE-030131-6022
Ensembl - ENSDARG00000012942
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ITGB5ENSGALG00000029766Gallus gallus
 ITGB5ENSG00000082781Homo sapiens
 Itgb5ENSMUSG00000022817Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
itgb3b / integrin beta 3b / ITGB3* / P05106* / O54890* / AC068234.1* / Integrin beta-3 * / integrin subunit beta 3*ENSDARG0000004507051
itgb3a / integrin beta 3a / ITGB3* / P05106* / AC068234.1* / integrin subunit beta 3*ENSDARG0000005676748
itgb6 / integrin, beta 6 / P18564* / Q9Z0T9* / integrin subunit beta 6*ENSDARG0000000249442
itgb1a / integrin, beta 1a / ITGB1* / P05556* / P09055* / Integrin beta-1 * / integrin subunit beta 1*ENSDARG0000007186339
itgb1b.1 / integrin, beta 1b.1ENSDARG0000005323238
itgb2 / integrin, beta 2 / Itgb2l* / P05107* / Q3UV74* / integrin subunit beta 2* / Integrin beta-2-like protein *ENSDARG0000001693934
itgb7 / integrin, beta 7 / P26010* / P26011* / integrin subunit beta 7*ENSDARG0000004431831
itgb8 / integrin, beta 8 / P26012* / integrin subunit beta 8*ENSDARG0000002822230
itgb4 / integrin, beta 4 / A2A863* / P16144* / integrin subunit beta 4*ENSDARG0000002850729
itgb1b.1 / itgb1b.2 / integrin, beta 1b.2ENSDARG0000002268929
itgb1b / integrin, beta 1b / ITGB1* / P05556* / integrin subunit beta 1*ENSDARG0000010448425
CABZ01058721.1 / ITGB1* / P05556* / integrin subunit beta 1*ENSDARG0000010992914
itgbl1 / integrin, beta-like 1 / O95965* / Q8VDV0* / integrin subunit beta like 1* / Integrin beta-like protein 1 *ENSDARG000000409859


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002369  Integrin beta subunit, VWA domain
 IPR012896  Integrin beta subunit, tail
 IPR013111  EGF-like domain, extracellular
 IPR014836  Integrin beta subunit, cytoplasmic domain
 IPR015812  Integrin beta subunit
 IPR016201  PSI domain
 IPR027067  Integrin beta-5 subunit
 IPR032695  Integrin domain superfamily
 IPR033760  Integrin beta N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Cross-presentation of particulate exogenous antigens (phagosomes)
Molecules associated with elastic fibres
Integrin cell surface interactions
ECM proteoglycans
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000053831 vtnb / vitronectin b / VTN* / P04004* / P29788* / AC002094.3* / vitronectin*  / complex / reaction






 

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