ENSDARG00000013453


Danio rerio

Features
Gene ID: ENSDARG00000013453
  
Biological name :tdrd9
  
Synonyms : B8A4F4 / tdrd9 / tudor domain containing 9
  
Possible biological names infered from orthology : ATP-dependent RNA helicase TDRD9 / Q14BI7 / Q8NDG6
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 31402067
Gene end: 31423346
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000011360
NCBI entrez gene - 553222     See in Manteia.
RefSeq - NM_001130512
RefSeq Peptide - NP_001123984
swissprot - B8A4F4
ZFIN ID - ZDB-GENE-090313-193
Ensembl - ENSDARG00000013453
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDRD9ENSGALG00000011565Gallus gallus
 TDRD9ENSG00000156414Homo sapiens
 Tdrd9ENSMUSG00000054003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx29 / DEAH (Asp-Glu-Ala-His) box polypeptide 29 / Q7Z478* / DExH-box helicase 29*ENSDARG0000004032618
dhx9 / DEAH (Asp-Glu-Ala-His) box helicase 9 / Q08211* / DExH-box helicase 9*ENSDARG0000007972518
dhx57 / DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 / Q6P158* / Q6P5D3* / DExH-box helicase 57* / Putative ATP-dependent RNA helicase DHX57 *ENSDARG0000005766018
dhx36 / DEAH (Asp-Glu-Ala-His) box polypeptide 36 / Q9H2U1* / DEAH-box helicase 36*ENSDARG0000010105917
LO017790.1 / Q9H6S0* / YTHDC2* / YTH domain containing 2*ENSDARG0000010352516
dhx30 / DEAH (Asp-Glu-Ala-His) box helicase 30 / Q7L2E3* / DExH-box helicase 30*ENSDARG0000007783915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR002999  Tudor domain
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IBA
 biological_processGO:0007140 male meiotic nuclear division ISS
 biological_processGO:0007141 male meiosis I ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis ISS
 biological_processGO:0009566 fertilization ISS
 biological_processGO:0010529 negative regulation of transposition ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0034587 piRNA metabolic process ISS
 biological_processGO:0043046 DNA methylation involved in gamete generation ISS
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0043186 P granule IBA
 cellular_componentGO:0071547 piP-body ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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