ENSDARG00000103525


Danio rerio

Features
Gene ID: ENSDARG00000103525
  
Biological name :LO017790.1
  
Synonyms : LO017790.1
  
Possible biological names infered from orthology : B2RR83 / Q9H6S0 / YTHDC2 / YTH domain containing 2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 1109098
Gene end: 1160823
  
Corresponding Affymetrix probe sets: Dr.18786.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000132196
swissprot - A0A0G2KIQ1
Ensembl - ENSDARG00000103525
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000000189Gallus gallus
 ENSGALG00000029681Gallus gallus
 Q9H6S0ENSG00000047188Homo sapiens
 B2RR83ENSMUSG00000034653Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx9 / DEAH (Asp-Glu-Ala-His) box helicase 9 / Q08211* / DExH-box helicase 9*ENSDARG0000007972521
dhx57 / DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 / Q6P158* / Q6P5D3* / DExH-box helicase 57* / Putative ATP-dependent RNA helicase DHX57 *ENSDARG0000005766021
dhx36 / DEAH (Asp-Glu-Ala-His) box polypeptide 36 / Q9H2U1* / DEAH-box helicase 36*ENSDARG0000010105920
dhx29 / DEAH (Asp-Glu-Ala-His) box polypeptide 29 / Q7Z478* / DExH-box helicase 29*ENSDARG0000004032619
dhx30 / DEAH (Asp-Glu-Ala-His) box helicase 30 / Q7L2E3* / DExH-box helicase 30*ENSDARG0000007783917
tdrd9 / B8A4F4 / tudor domain containing 9 / Q14BI7* / Q8NDG6* / ATP-dependent RNA helicase TDRD9 *ENSDARG0000001345315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001374  R3H domain
 IPR001650  Helicase, C-terminal
 IPR007275  YTH domain
 IPR007502  Helicase-associated domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR020683  Ankyrin repeat-containing domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034083  DExH-box ATP-dependent RNA helicase, R3H domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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