ENSDARG00000040326


Danio rerio

Features
Gene ID: ENSDARG00000040326
  
Biological name :dhx29
  
Synonyms : DEAH (Asp-Glu-Ala-His) box polypeptide 29 / dhx29
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DHX29 / DExH-box helicase 29 / Q6PGC1 / Q7Z478
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 8154874
Gene end: 8197049
  
Corresponding Affymetrix probe sets: Dr.9383.1.A1_at (Zebrafish Array)   XM_692841_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000107280
NCBI entrez gene - 553505     See in Manteia.
RefSeq - XM_692841
swissprot - E7F525
ZFIN ID - ZDB-GENE-130530-606
Ensembl - ENSDARG00000040326
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DHX29ENSGALG00000014700Gallus gallus
 DHX29ENSG00000067248Homo sapiens
 Dhx29ENSMUSG00000042426Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx57 / DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 / Q6P158* / Q6P5D3* / DExH-box helicase 57* / Putative ATP-dependent RNA helicase DHX57 *ENSDARG0000005766028
dhx36 / DEAH (Asp-Glu-Ala-His) box polypeptide 36 / Q9H2U1* / DEAH-box helicase 36*ENSDARG0000010105925
dhx9 / DEAH (Asp-Glu-Ala-His) box helicase 9 / Q08211* / DExH-box helicase 9*ENSDARG0000007972523
dhx30 / DEAH (Asp-Glu-Ala-His) box helicase 30 / Q7L2E3* / DExH-box helicase 30*ENSDARG0000007783921
LO017790.1 / Q9H6S0* / YTHDC2* / YTH domain containing 2*ENSDARG0000010352520
tdrd9 / B8A4F4 / tudor domain containing 9 / Q14BI7* / Q8NDG6* / ATP-dependent RNA helicase TDRD9 *ENSDARG0000001345317


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034730  ATP-dependent RNA helicase DHX29


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation IEA
 biological_processGO:0045948 positive regulation of translational initiation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003724 RNA helicase activity IEA
 molecular_functionGO:0003743 translation initiation factor activity IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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