ENSDARG00000079725


Danio rerio

Features
Gene ID: ENSDARG00000079725
  
Biological name :dhx9
  
Synonyms : DEAH (Asp-Glu-Ala-His) box helicase 9 / dhx9
  
Possible biological names infered from orthology : DExH-box helicase 9 / Q08211
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 35854242
Gene end: 35873590
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000118509
NCBI entrez gene - 568043     See in Manteia.
RefSeq - NM_001201444
RefSeq Peptide - NP_001188373
swissprot - B0S6Z1
ZFIN ID - ZDB-GENE-070912-171
Ensembl - ENSDARG00000079725
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DHX9ENSG00000135829Homo sapiens
 Dhx9ENSMUSG00000042699Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx29 / DEAH (Asp-Glu-Ala-His) box polypeptide 29 / Q7Z478* / DExH-box helicase 29*ENSDARG0000004032625
dhx57 / DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 / Q6P158* / Q6P5D3* / DExH-box helicase 57* / Putative ATP-dependent RNA helicase DHX57 *ENSDARG0000005766025
dhx36 / DEAH (Asp-Glu-Ala-His) box polypeptide 36 / Q9H2U1* / DEAH-box helicase 36*ENSDARG0000010105924
LO017790.1 / Q9H6S0* / YTHDC2* / YTH domain containing 2*ENSDARG0000010352523
dhx30 / DEAH (Asp-Glu-Ala-His) box helicase 30 / Q7L2E3* / DExH-box helicase 30*ENSDARG0000007783922
tdrd9 / B8A4F4 / tudor domain containing 9 / Q14BI7* / Q8NDG6* / ATP-dependent RNA helicase TDRD9 *ENSDARG0000001345319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014720  Double-stranded RNA-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
RIP-mediated NFkB activation via ZBP1
DEx/H-box helicases activate type I IFN and inflammatory cytokines production
TAK1 activates NFkB by phosphorylation and activation of IKKs complex
mRNA Splicing - Major Pathway
TRAF6 mediated NF-kB activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism amount , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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