ENSDARG00000018066


Danio rerio

Features
Gene ID: ENSDARG00000018066
  
Biological name :ptchd1
  
Synonyms : patched domain containing 1 / ptchd1
  
Possible biological names infered from orthology : Patched domain-containing protein 1 / Q14B62 / Q96NR3
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 25347503
Gene end: 25364775
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126544
Ensembl peptide - ENSDARP00000153962
NCBI entrez gene - 562268     See in Manteia.
swissprot - K7DYL5
ZFIN ID - ZDB-GENE-061220-1
Ensembl - ENSDARG00000018066
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTCHD1ENSGALG00000016358Gallus gallus
 PTCHD1ENSG00000165186Homo sapiens
 Ptchd1ENSMUSG00000041552Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptchd4 / Q5RIV7 / patched domain containing 4 / Q6ZW05* / Mus musculus patched domain containing 4 (Ptchd4), transcript variant 1, mRNA.*ENSDARG0000000824949
si:ch211-250m6.7 / PTCHD3* / Q0EEE2* / Q3KNS1* / patched domain containing 3*ENSDARG0000006887426
CR792422.1 / PTCHD3* / Q3KNS1* / patched domain containing 3*ENSDARG0000001007518
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG0000001640417
npc1 / Niemann-Pick disease, type C1 / O15118* / O35604* / Niemann-Pick C1 protein * / NPC intracellular cholesterol transporter 1*ENSDARG0000001718017
ptch2 / patched 2 / 2 * / O35595* / Q9Y6C5*ENSDARG0000005502616
NPC1L1 / NPC1 like intracellular cholesterol transporter 1 / Q9UHC9*ENSDARG0000009955812
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG000000958591


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr