ENSGALG00000016358


Gallus gallus

Features
Gene ID: ENSGALG00000016358
  
Biological name :PTCHD1
  
Synonyms : patched domain containing 1 / PTCHD1
  
Possible biological names infered from orthology : Patched domain-containing protein 1 / Q14B62 / Q96NR3
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 118434845
Gene end: 118464479
  
Corresponding Affymetrix probe sets: Gga.10092.1.S1_at (Chicken Array)   Gga.17391.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026339
NCBI entrez gene - 427995     See in Manteia.
RefSeq - XM_425565
swissprot - F1NNS7
Ensembl - ENSGALG00000016358
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptchd1ENSDARG00000018066Danio rerio
 PTCHD1ENSG00000165186Homo sapiens
 Ptchd1ENSMUSG00000041552Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTCHD4 / patched domain-containing protein 4 / Q6ZW05* / patched domain containing 4* / Mus musculus patched domain containing 4 (Ptchd4), transcript variant 1, mRNA.*ENSGALG0000001672650
PTCHD3 / patched domain containing 3 / Q0EEE2* / Q3KNS1*ENSGALG0000002334726
NPC1 / NPC intracellular cholesterol transporter 1 / O15118* / O35604* / Niemann-Pick C1 protein *ENSGALG0000001503017
PTCH1 / protein patched homolog 1 / Q13635* / Q61115* / patched 1* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSGALG0000001262016
PTCH2 / patched 2 / 2 * / O35595* / Q9Y6C5*ENSGALG0000001013315


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0021794 thalamus development IEA
 biological_processGO:0035176 social behavior IEA
 biological_processGO:0050890 cognition IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr