ENSDARG00000008249


Danio rerio

Features
Gene ID: ENSDARG00000008249
  
Biological name :ptchd4
  
Synonyms : patched domain containing 4 / ptchd4 / Q5RIV7
  
Possible biological names infered from orthology : Mus musculus patched domain containing 4 (Ptchd4), transcript variant 1, mRNA. / Q6ZW05
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 36066408
Gene end: 36107422
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115181
NCBI entrez gene - 564097     See in Manteia.
swissprot - Q5RIV7
ZFIN ID - ZDB-GENE-041001-178
Ensembl - ENSDARG00000008249
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTCHD4ENSGALG00000016726Gallus gallus
 PTCHD4ENSG00000244694Homo sapiens
 Ptchd4ENSMUSG00000042256Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptchd1 / patched domain containing 1 / Q14B62* / Q96NR3* / Patched domain-containing protein 1 *ENSDARG0000001806648
si:ch211-250m6.7 / PTCHD3* / Q0EEE2* / Q3KNS1* / patched domain containing 3*ENSDARG0000006887423
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG0000001640417
npc1 / Niemann-Pick disease, type C1 / O15118* / O35604* / Niemann-Pick C1 protein * / NPC intracellular cholesterol transporter 1*ENSDARG0000001718016
ptch2 / patched 2 / 2 * / O35595* / Q9Y6C5*ENSDARG0000005502616
CR792422.1 / PTCHD3* / Q3KNS1* / patched domain containing 3*ENSDARG0000001007515
NPC1L1 / NPC1 like intracellular cholesterol transporter 1 / Q9UHC9*ENSDARG0000009955812
ptch1 / patched 1 / Q13635* / Q61115* / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA.*ENSDARG000000958592


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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