ENSMUSG00000042256


Mus musculus

Features
Gene ID: ENSMUSG00000042256
  
Biological name :Ptchd4
  
Synonyms : Mus musculus patched domain containing 4 (Ptchd4), transcript variant 1, mRNA. / Ptchd4
  
Possible biological names infered from orthology : patched domain containing 4 / Q6ZW05
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: B3
Gene start: 42315947
Gene end: 42507741
  
Corresponding Affymetrix probe sets: 10445232 (MoGene1.0st)   10445237 (MoGene1.0st)   1441559_at (Mouse Genome 430 2.0 Array)   1453598_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000047640
NCBI entrez gene - 627626     See in Manteia.
MGI - MGI:1920485
RefSeq - XM_006524754
RefSeq - NM_001355270
RefSeq - NM_028474
RefSeq - XM_006524751
RefSeq - XM_006524752
RefSeq - XM_006524753
RefSeq Peptide - NP_001342199
RefSeq Peptide - NP_082750
swissprot - E9QMK6
Ensembl - ENSMUSG00000042256
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptchd4ENSDARG00000008249Danio rerio
 PTCHD4ENSGALG00000016726Gallus gallus
 PTCHD4ENSG00000244694Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ptchd1 / Q14B62 / Patched domain-containing protein 1 / Q96NR3* / patched domain containing 1*ENSMUSG0000004155249
Ptchd3 / Q0EEE2 / patched domain containing 3 / Q3KNS1*ENSMUSG0000003919823
Npc1l1 / NPC1 like intracellular cholesterol transporter 1 / Q9UHC9*ENSMUSG0000002044717
Ptch1 / Q61115 / Mus musculus patched 1 (Ptch1), transcript variant 2, mRNA. / Q13635* / patched 1*ENSMUSG0000002146616
Npc1 / O35604 / Niemann-Pick C1 protein / O15118* / NPC intracellular cholesterol transporter 1*ENSMUSG0000002441315
2 / Ptch2 / O35595 / Q9Y6C5* / patched 2*ENSMUSG0000002868115


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr