ENSDARG00000020072


Danio rerio

Features
Gene ID: ENSDARG00000020072
  
Biological name :thbs4b
  
Synonyms : thbs4b / thrombospondin 4b
  
Possible biological names infered from orthology : P35443 / Q9Z1T2 / THBS4 / thrombospondin 4
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 5129513
Gene end: 5162687
  
Corresponding Affymetrix probe sets: Dr.4572.1.S1_at (Zebrafish Array)   NM_173226_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000093348
NCBI entrez gene - 252850     See in Manteia.
RefSeq - NM_173226
RefSeq Peptide - NP_775333
swissprot - F1R1P9
ZFIN ID - ZDB-GENE-020708-4
Ensembl - ENSDARG00000020072
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 THBS4ENSGALG00000014804Gallus gallus
 THBS4ENSG00000113296Homo sapiens
 Thbs4ENSMUSG00000021702Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
thbs4a / thrombospondin 4a / THBS4* / P35443* / thrombospondin 4*ENSDARG0000010277767
thbs3a / thrombospondin 3a / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000007764158
Q1L8P7 / thbs3b / thrombospondin 3b / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000001206057
COMP / si:ch211-43f4.1 / P49747* / Q9R0G6* / cartilage oligomeric matrix protein*ENSDARG0000009843154
thbs2b / thrombospondin 2b / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000007381042
thbs2a / thrombospondin 2a / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000006041041
thbs1b / thrombospondin 1b / THBS1* / P07996* / thrombospondin 1*ENSDARG0000001078541


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR003367  Thrombospondin, type 3-like repeat
 IPR008859  Thrombospondin, C-terminal
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017897  Thrombospondin, type 3 repeat
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024665  Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain
 IPR028974  TSP type-3 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Signaling by PDGF


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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