ENSDARG00000098431


Danio rerio

Features
Gene ID: ENSDARG00000098431
  
Biological name :COMP
  
Synonyms : COMP / si:ch211-43f4.1
  
Possible biological names infered from orthology : cartilage oligomeric matrix protein / P49747 / Q9R0G6
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 6941389
Gene end: 6974022
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130361
Ensembl peptide - ENSDARP00000142363
NCBI entrez gene - 100318854     See in Manteia.
RefSeq - XM_017358194
RefSeq Peptide - NP_001313279
swissprot - A0A0G2KDJ5
ZFIN ID - ZDB-GENE-060606-1
ZFIN ID - ZDB-GENE-160113-156
Ensembl - ENSDARG00000098431
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COMPENSGALG00000003283Gallus gallus
 COMPENSG00000105664Homo sapiens
 CompENSMUSG00000031849Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
thbs4b / thrombospondin 4b / THBS4* / Q9Z1T2* / P35443* / thrombospondin 4*ENSDARG0000002007269
thbs4a / thrombospondin 4a / THBS4* / P35443* / thrombospondin 4*ENSDARG0000010277766
thbs3a / thrombospondin 3a / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000007764164
Q1L8P7 / thbs3b / thrombospondin 3b / THBS3* / Q05895* / P49746* / thrombospondin 3*ENSDARG0000001206062
thbs1b / thrombospondin 1b / THBS1* / P07996* / thrombospondin 1*ENSDARG0000001078549
thbs2b / thrombospondin 2b / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000007381048
thbs2a / thrombospondin 2a / THBS2* / Q03350* / P35442* / thrombospondin 2*ENSDARG0000006041048


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003367  Thrombospondin, type 3-like repeat
 IPR008859  Thrombospondin, C-terminal
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017897  Thrombospondin, type 3 repeat
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024665  Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain
 IPR028974  TSP type-3 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Integrin cell surface interactions
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000006353 itga5 / integrin, alpha 5 (fibronectin receptor, alpha polypeptide) / P08648* / P11688* / integrin subunit alpha 5* / Integrin alpha-5 Integrin alpha-5 heavy chain Integrin alpha-5 light chain*  / reaction / complex
 ENSDARG00000071863 itgb1a / integrin, beta 1a / ITGB1* / P05556* / P09055* / Integrin beta-1 * / integrin subunit beta 1*  / complex / reaction
 ENSDARG00000098431 COMP / si:ch211-43f4.1 / P49747* / Q9R0G6* / cartilage oligomeric matrix protein*  / complex






 

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