ENSG00000105664


Homo sapiens

Features
Gene ID: ENSG00000105664
  
Biological name :COMP
  
Synonyms : cartilage oligomeric matrix protein / COMP / P49747
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.11
Gene start: 18782773
Gene end: 18791314
  
Corresponding Affymetrix probe sets: 205713_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000403792
Ensembl peptide - ENSP00000439156
Ensembl peptide - ENSP00000222271
NCBI entrez gene - 1311     See in Manteia.
OMIM - 600310
RefSeq - NM_000095
RefSeq Peptide - NP_000086
swissprot - G3XAP6
swissprot - P49747
Ensembl - ENSG00000105664
  
Related genetic diseases (OMIM): 132400 - Epiphyseal dysplasia, multiple, 1, 132400
  177170 - Pseudoachondroplasia, 177170
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COMPENSDARG00000098431Danio rerio
 COMPENSGALG00000003283Gallus gallus
 CompENSMUSG00000031849Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
THBS4 / P35443 / thrombospondin 4ENSG0000011329669
THBS3 / P49746 / thrombospondin 3ENSG0000016923163
THBS2 / P35442 / thrombospondin 2ENSG0000018634050
THBS1 / P07996 / thrombospondin 1ENSG0000013780149


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR003367  Thrombospondin, type 3-like repeat
 IPR008859  Thrombospondin, C-terminal
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017897  Thrombospondin, type 3 repeat
 IPR018097  EGF-like calcium-binding, conserved site
 IPR024665  Thrombospondin/cartilage oligomeric matrix protein, coiled-coil domain
 IPR028492  Cartilage oligomeric matrix protein
 IPR028974  TSP type-3 repeat
 IPR037349  Thrombospondin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0003417 growth plate cartilage development IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0043066 negative regulation of apoptotic process IDA
 biological_processGO:0060173 limb development IDA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005201 extracellular matrix structural constituent TAS
 molecular_functionGO:0005509 calcium ion binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005518 collagen binding IDA
 molecular_functionGO:0008201 heparin binding IEA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding IDA


Pathways (from Reactome)
Pathway description
Integrin cell surface interactions
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001156 Brachydactyly 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001377 Limited elbow extension 
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 HP:0001385 Hip dysplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001425 Heterogeneous 
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 HP:0001498 Carpal bone hypoplasia 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002341 Cervical cord compression 
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002656 Epiphyseal dysplasia 
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 HP:0002663 Late ossifying epiphyses 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002761 Generalized joint laxity "Joint hypermobility (ability of a joint to move beyond its normal range of motion) affecting many or all joints of the body." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002816 Genu recurvatum 
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 HP:0002829 Arthralgia 
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 HP:0002834 Flared femurs and humeri 
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 HP:0002857 Genu valgum 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002970 Genu varum 
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 HP:0002983 Micromelia 
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 HP:0003026 Short long bones 
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 HP:0003049 Ulnar deviation of the wrist 
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 HP:0003093 Limited elbow and hip extension 
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003301 Irregular vertebral endplates "An irregular surface of the vertebral end plates, which are normally relatively smooth." [HPO:curators]
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 HP:0003307 Hyperlordosis 
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 HP:0003311 Hypoplastic odontoid process 
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 HP:0003414 Atlantoaxial dislocation "Partial dislocation of the atlantoaxial joint." [HPO:curators]
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 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0004019 Irregular radial metaphysis 
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 HP:0004042 Irregular ulnar metaphysis 
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 HP:0004236 Irregular carpal bones 
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 HP:0004279 Hypoplastic hand 
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 HP:0004390 Hamartomatous polyps "Polyp-like protrusions which are histologically hamartomas. These can occur throughout the gastrointestine. Patients with Cowden-Syndrom for example often have multpile hamartomatous gastrointestinal polyps." [HPO:curators]
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 HP:0004568 Beaking of vertebral bodies 
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 HP:0005063 fragmented, irregular epiphyses 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005743 Abnormal femoral head with degenerative changes 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006429 Broad femoral neck "An abnormally wide femoral neck (which is the process of bone, connecting the femoral head with the femoral shaft)." [HPO:Curators]
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 HP:0008800 Limited hip movement 
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 HP:0008843 Hip osteoarthritis 
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0009487 Ulnar deviation of the hand "A deviation of the orientation of the hand in the direction of the ulna (i.e., towards the little finger)." [HPO:curators]
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010236 Small epiphyses of the phalanges of the hand "Abnormally small size of the epiphyses of the phalanges of the fingers with respect to age-dependent norms." [HPO:curators]
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 HP:0010582 Irregular epiphyses 
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 HP:0010585 Small epiphyses 
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 HP:0011405 Childhood onset short-limb short stature 
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 HP:0012307 Spatulate ribs "Ribs that are increased in width and taper to the posterior ends." [HPO:probinson, pmid:20504305]
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 HP:0100168 Fragmented epiphyses "Fragmented appearance of the epiphyses." [HPO:sdoelken]
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 HP:0100864 Hypoplasia of the femoral neck 
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 HP:0200008 Multiple intestinal polyps 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105664 COMP / P49747 / cartilage oligomeric matrix protein  / complex
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / reaction / complex
 ENSG00000161638 ITGA5 / P08648 / integrin subunit alpha 5  / reaction / complex
 ENSG00000138448 ITGAV / P06756 / integrin subunit alpha V  / complex / reaction
 ENSG00000259207 ITGB3 / P05106 / integrin subunit beta 3  / complex / reaction
 ENSG00000196776 CD47 / Q08722 / CD47 molecule  / reaction / complex






 

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