ENSDARG00000025754


Danio rerio

Features
Gene ID: ENSDARG00000025754
  
Biological name :ube2f
  
Synonyms : Q6NY82 / ube2f / ubiquitin-conjugating enzyme E2F (putative)
  
Possible biological names infered from orthology : Q969M7 / Q9CY34 / UBE2F-SCLY / UBE2F-SCLY readthrough (NMD candidate)
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 6646529
Gene end: 6664123
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000094476
Ensembl peptide - ENSDARP00000120196
Ensembl peptide - ENSDARP00000121227
NCBI entrez gene - 406606     See in Manteia.
RefSeq - NM_213314
RefSeq Peptide - NP_998479
swissprot - Q6NY82
swissprot - Z4YJ09
ZFIN ID - ZDB-GENE-040426-2557
Ensembl - ENSDARG00000025754
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBE2FENSGALG00000003812Gallus gallus
 UBE2FENSG00000184182Homo sapiens
 UBE2F-SCLYENSG00000258984Homo sapiens
 Ube2fENSMUSG00000034343Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UBE2M / si:ch1073-205c8.3 / P61081* / P61082* / ubiquitin conjugating enzyme E2 M*ENSDARG0000010152135


Protein motifs (from Interpro)
Interpro ID Name
 IPR000608  Ubiquitin-conjugating enzyme E2
 IPR016135  Ubiquitin-conjugating enzyme/RWD-like
 IPR023313  Ubiquitin-conjugating enzyme, active site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0045116 protein neddylation ISS
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019788 NEDD8 transferase activity ISS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007989 nedd8 / neural precursor cell expressed, developmentally down-regulated 8 / P29595* / Q15843*  / complex / reaction
 ENSDARG00000031203 commd1 / copper metabolism (Murr1) domain containing 1 / Q8K4M5* / Q8N668* / Gm28048* / COMM domain-containing protein 1 * / copper metabolism domain containing 1*  / reaction / complex
 ENSDARG00000057987 uba3 / Q7ZVX6 / ubiquitin-like modifier activating enzyme 3 / Q8C878* / Q8TBC4*  / complex / reaction






 

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