ENSDARG00000031203


Danio rerio

Features
Gene ID: ENSDARG00000031203
  
Biological name :commd1
  
Synonyms : commd1 / copper metabolism (Murr1) domain containing 1
  
Possible biological names infered from orthology : COMM domain-containing protein 1 / copper metabolism domain containing 1 / Gm28048 / Q8K4M5 / Q8N668
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 53490669
Gene end: 53504603
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136450
Ensembl peptide - ENSDARP00000091561
NCBI entrez gene - 692293     See in Manteia.
RefSeq - NM_001045265
RefSeq Peptide - NP_001038730
swissprot - B8A6D0
ZFIN ID - ZDB-GENE-060512-329
Ensembl - ENSDARG00000031203
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COMMD1ENSGALG00000008931Gallus gallus
 COMMD1ENSG00000173163Homo sapiens
 Commd1ENSMUSG00000051355Mus musculus
 Gm28048ENSMUSG00000098650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR017920  COMM domain
 IPR033776  COMMD1 N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031398 positive regulation of protein ubiquitination IBA
 biological_processGO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 biological_processGO:0055070 copper ion homeostasis IBA
 biological_processGO:1902306 negative regulation of sodium ion transmembrane transport IBA
 biological_processGO:2000009 negative regulation of protein localization to cell surface IBA
 cellular_componentGO:0005768 endosome IBA


Pathways (from Reactome)
Pathway description
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007989 nedd8 / neural precursor cell expressed, developmentally down-regulated 8 / P29595* / Q15843*  / complex / reaction
 ENSDARG00000038967 cul3a / cullin 3a / CUL3* / Q13618* / Q9JLV5* / cullin 3*  / complex / reaction
 ENSDARG00000038030 rbx1 / ring-box 1, E3 ubiquitin protein ligase / P62878* / P62877* / ring-box 1* / E3 ubiquitin-protein ligase RBX1 E3 ubiquitin-protein ligase RBX1, N-terminally processed*  / complex / reaction
 ENSDARG00000057624 cops5 / Q6PC30 / COP9 signalosome subunit 5 / O35864* / Q92905* / COP9 signalosome complex subunit 5 *  / reaction
 ENSDARG00000096578 cul4a / cullin 4A / Q13619* / Q3TCH7*  / reaction / complex
 ENSDARG00000060510 cul4b / cullin 4B / A2A432* / Q13620*  / reaction / complex
 ENSDARG00000011493 dcun1d3 / defective in cullin neddylation 1 domain containing 3 / Q8IWE4* / Q8K0V2* / DCN1-like protein 3 *  / reaction / complex
 ENSDARG00000025754 ube2f / Q6NY82 / ubiquitin-conjugating enzyme E2F (putative) / Q969M7* / Q9CY34* / UBE2F-SCLY* / UBE2F-SCLY readthrough (NMD candidate)*  / reaction / complex
 ENSDARG00000100108 cul3b / cullin 3b / CUL3* / Q13618* / Q9JLV5* / cullin 3*  / complex / reaction
 ENSDARG00000003151 skp1 / S-phase kinase-associated protein 1 / Skp1a* / P63208* / Q9WTX5* / AC104109.3* / S-phase kinase-associated protein 1A*  / complex / reaction
 ENSDARG00000019239 cul1a / cullin 1a / CUL1* / Q13616* / Q9WTX6* / cullin 1* / Mus musculus cullin 1 (Cul1), transcript variant 3, mRNA.*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr