ENSDARG00000100108


Danio rerio

Features
Gene ID: ENSDARG00000100108
  
Biological name :cul3b
  
Synonyms : cul3b / cullin 3b
  
Possible biological names infered from orthology : CUL3 / cullin 3 / Q13618 / Q9JLV5
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 1765988
Gene end: 1795631
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132246
Ensembl peptide - ENSDARP00000141170
NCBI entrez gene - 572370     See in Manteia.
swissprot - A0A0R4IXY4
swissprot - B3DIU1
ZFIN ID - ZDB-GENE-081007-1
Ensembl - ENSDARG00000100108
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CUL3ENSGALG00000005108Gallus gallus
 CUL3ENSG00000036257Homo sapiens
 Cul3ENSMUSG00000004364Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cul3a / cullin 3a / CUL3* / Q13618* / Q9JLV5* / cullin 3*ENSDARG0000003896797
cul4b / cullin 4B / A2A432* / Q13620*ENSDARG0000006051038
cul4a / cullin 4A / Q13619* / Q3TCH7*ENSDARG0000009657832
cul1a / cullin 1a / CUL1* / Q13616* / Q9WTX6* / cullin 1* / Mus musculus cullin 1 (Cul1), transcript variant 3, mRNA.*ENSDARG0000001923931
cul1b / cullin 1b / CUL1* / Q13616* / Q9WTX6* / cullin 1* / Mus musculus cullin 1 (Cul1), transcript variant 3, mRNA.*ENSDARG0000000769130
cul2 / cullin 2 / Q13617* / Q9D4H8*ENSDARG0000001396527
cul5a / cullin 5a / CUL5* / Q93034* / cullin 5*ENSDARG0000006974223
cul5b / cullin 5b / CUL5* / Q93034* / cullin 5*ENSDARG0000000426023


Protein motifs (from Interpro)
Interpro ID Name
 IPR001373  Cullin, N-terminal
 IPR011991  ArsR-like helix-turn-helix domain
 IPR016157  Cullin, conserved site
 IPR016158  Cullin homology domain
 IPR016159  Cullin repeat-like-containing domain superfamily
 IPR019559  Cullin protein, neddylation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0031461 cullin-RING ubiquitin ligase complex IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA


Pathways (from Reactome)
Pathway description
Degradation of DVL
Hedgehog on state
Regulation of RAS by GAPs
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000031203 commd1 / copper metabolism (Murr1) domain containing 1 / Q8K4M5* / Q8N668* / Gm28048* / COMM domain-containing protein 1 * / copper metabolism domain containing 1*  / reaction / complex
 ENSDARG00000038967 cul3a / cullin 3a / CUL3* / Q13618* / Q9JLV5* / cullin 3*  / complex
 ENSDARG00000038030 rbx1 / ring-box 1, E3 ubiquitin protein ligase / P62878* / P62877* / ring-box 1* / E3 ubiquitin-protein ligase RBX1 E3 ubiquitin-protein ligase RBX1, N-terminally processed*  / complex
 ENSDARG00000078001 kbtbd7 / kelch repeat and BTB (POZ) domain containing 7 / Q86V97* / KBTBD6* / Q8WVZ9* / uncharacterized protein LOC432879 * / kelch repeat and BTB domain containing 7* / kelch repeat and BT...  / complex
 ENSDARG00000007989 nedd8 / neural precursor cell expressed, developmentally down-regulated 8 / P29595* / Q15843*  / complex
 ENSDARG00000100108 cul3b / cullin 3b / CUL3* / Q13618* / Q9JLV5* / cullin 3*  / complex
 ENSDARG00000100519 spop / Q7T330 / speckle-type POZ protein / Gm5773* / Gm9117* / Gm9125* / O43791* / P0DMR5* / P0DMR6* / Tdpoz5* / Gm4778* / Gm4858* / Gm5286* / Q6YCH2* / Q6ZWS8* / Q717B2* / Q717B4* / Tdpoz1...  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr