ENSDARG00000027966


Danio rerio

Features
Gene ID: ENSDARG00000027966
  
Biological name :ap1s3b
  
Synonyms : adaptor-related protein complex 1, sigma 3 subunit, b / ap1s3b
  
Possible biological names infered from orthology : adaptor related protein complex 1 sigma 3 subunit / AP-1 complex subunit sigma-3 / AP1S3 / Q7TN05 / Q96PC3
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 47587238
Gene end: 47620806
  
Corresponding Affymetrix probe sets: Dr.1084.1.A1_at (Zebrafish Array)   NM_001004635_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038591
NCBI entrez gene - 447897     See in Manteia.
RefSeq - NM_001004635
RefSeq Peptide - NP_001004635
swissprot - Q66IE3
ZFIN ID - ZDB-GENE-040912-62
Ensembl - ENSDARG00000027966
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AP1S3ENSGALG00000005171Gallus gallus
 AP1S3ENSG00000152056Homo sapiens
 Ap1s3ENSMUSG00000054702Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ap1s3a / adaptor-related protein complex 1, sigma 3 subunit, a / AP1S3* / Q96PC3* / adaptor related protein complex 1 sigma 3 subunit*ENSDARG0000011043977
ap1s1 / adaptor-related protein complex 1, sigma 1 subunit / P61966* / P61967* / AP-1 complex subunit sigma-1A *ENSDARG0000005680369
ap1s2 / adaptor-related protein complex 1, sigma 2 subunitENSDARG0000005850468
CABZ01102528.1ENSDARG0000009899044
ap2s1 / adaptor-related protein complex 2, sigma 1 subunit / P53680* / P62743* / AP-2 complex subunit sigma *ENSDARG0000002696738
ap4s1 / adaptor-related protein complex 4, sigma 1 subunit / Q9WVL1* / Q9Y587* / AP-4 complex subunit sigma-1 *ENSDARG0000005422037
AP1S2 / adaptor related protein complex 1 sigma 2 subunit / P56377*ENSDARG0000011322522


Protein motifs (from Interpro)
Interpro ID Name
 IPR000804  Clathrin adaptor complex, small chain
 IPR011012  Longin-like domain superfamily
 IPR016635  Adaptor protein complex, sigma subunit
 IPR022775  AP complex, mu/sigma subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 molecular_functionGO:0008565 protein transporter activity IEA


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000009087 cd74a / CD74 molecule, major histocompatibility complex, class II invariant chain a / CD74* / P04233* / P04441* / CD74 molecule* / CD74 antigen (invariant polypeptide of major histocompatib...  / complex
 ENSDARG00000096454 ap1m2 / adaptor-related protein complex 1, mu 2 subunit / Q9Y6Q5*  / complex
 ENSDARG00000020621 ap1b1 / adaptor-related protein complex 1, beta 1 subunit / O35643* / Q10567* / Mus musculus adaptor protein complex AP-1, beta 1 subunit (Ap1b1), transcript variant 4, mRNA.*  / complex
 ENSDARG00000096249 ap1m1 / adaptor-related protein complex 1, mu 1 subunit / Q9BXS5*  / complex
 ENSDARG00000045618 clta / clathrin, light chain A / P09496*  / complex
 ENSDARG00000053122 clvs2 / Q5SPP0 / clavesin 2 / CLVS1* / Q8IUQ0* / clavesin 1*  / complex
 ENSDARG00000090716 cltcb / clathrin, heavy chain b (Hc) / CLTC* / Q00610* / clathrin heavy chain*  / complex






 

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