ENSDARG00000029710


Danio rerio

Features
Gene ID: ENSDARG00000029710
  
Biological name :lrrc30a
  
Synonyms : leucine rich repeat containing 30a / lrrc30a
  
Possible biological names infered from orthology : A6NM36 / leucine rich repeat containing 30 / LRRC30
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 41678257
Gene end: 41679356
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000046820
NCBI entrez gene - 552944     See in Manteia.
RefSeq - NM_001082800
RefSeq Peptide - NP_001076269
swissprot - A3KNU3
ZFIN ID - ZDB-GENE-050506-25
Ensembl - ENSDARG00000029710
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC30ENSGALG00000042652Gallus gallus
 A6NM36ENSG00000206422Homo sapiens
 Lrrc30ENSMUSG00000073375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrrc40 / leucine rich repeat containing 40 / Q9H9A6* / leucine-rich repeat-containing protein 40 isoform b *ENSDARG0000001770833
scrib / Q4H4B6 / scribbled planar cell polarity protein / Q14160* / Q80U72*ENSDARG0000000086131
mfhas1 / malignant fibrous histiocytoma amplified sequence 1 / Q3V1N1* / Q9Y4C4* / Malignant fibrous histiocytoma-amplified sequence 1 homolog *ENSDARG0000007910429
lrrc1 / leucine rich repeat containing 1 / Q9BTT6*ENSDARG0000010268428
lrrc7 / leucine rich repeat containing 7 / Q96NW7*ENSDARG0000007967027
shoc2 / Q1L8Y7 / SHOC2 leucine-rich repeat scaffold protein / O88520* / Q9UQ13* / Mus musculus soc-2 (suppressor of clear) homolog (C. elegans) (Shoc2), transcript variant 3, mRNA.*ENSDARG0000004085326
erbin / erbb2 interacting protein / Q80TH2* / Q96RT1*ENSDARG0000004428125
lrrc10 / leucine rich repeat containing 10 / Q5BKY1* / Q8K3W2* / Leucine-rich repeat-containing protein 10 *ENSDARG0000004561217
ascl1b / achaete-scute family bHLH transcription factor 1bENSDARG0000000970216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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