ENSDARG00000017708


Danio rerio

Features
Gene ID: ENSDARG00000017708
  
Biological name :lrrc40
  
Synonyms : leucine rich repeat containing 40 / lrrc40
  
Possible biological names infered from orthology : leucine-rich repeat-containing protein 40 isoform b / Q9H9A6
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 30113750
Gene end: 30122554
  
Corresponding Affymetrix probe sets: Dr.9067.1.A1_at (Zebrafish Array)   NM_199862_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016699
NCBI entrez gene - 334130     See in Manteia.
RefSeq - NM_199862
RefSeq Peptide - NP_956156
swissprot - F1REP7
ZFIN ID - ZDB-GENE-030131-6062
Ensembl - ENSDARG00000017708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC40ENSGALG00000011301Gallus gallus
 LRRC40ENSG00000066557Homo sapiens
 Lrrc40ENSMUSG00000063052Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
shoc2 / Q1L8Y7 / SHOC2 leucine-rich repeat scaffold protein / O88520* / Q9UQ13* / Mus musculus soc-2 (suppressor of clear) homolog (C. elegans) (Shoc2), transcript variant 3, mRNA.*ENSDARG0000004085322
scrib / Q4H4B6 / scribbled planar cell polarity protein / Q14160* / Q80U72*ENSDARG0000000086121
lrrc7 / leucine rich repeat containing 7 / Q96NW7*ENSDARG0000007967021
mfhas1 / malignant fibrous histiocytoma amplified sequence 1 / Q3V1N1* / Q9Y4C4* / Malignant fibrous histiocytoma-amplified sequence 1 homolog *ENSDARG0000007910420
erbin / erbb2 interacting protein / Q80TH2* / Q96RT1*ENSDARG0000004428119
ascl1b / achaete-scute family bHLH transcription factor 1bENSDARG0000000970215
lrrc1 / leucine rich repeat containing 1 / Q9BTT6*ENSDARG0000010268414
lrrc10 / leucine rich repeat containing 10 / Q5BKY1* / Q8K3W2* / Leucine-rich repeat-containing protein 10 *ENSDARG000000456129
lrrc30a / leucine rich repeat containing 30a / A6NM36* / LRRC30* / leucine rich repeat containing 30*ENSDARG000000297109


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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