ENSDARG00000029818


Danio rerio

Features
Gene ID: ENSDARG00000029818
  
Biological name :srsf5a
  
Synonyms : serine/arginine-rich splicing factor 5a / srsf5a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 36526806
Gene end: 36535128
  
Corresponding Affymetrix probe sets: Dr.25458.2.S1_at (Zebrafish Array)   NM_200867_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000147482
Ensembl peptide - ENSDARP00000043311
Ensembl peptide - ENSDARP00000124561
Ensembl peptide - ENSDARP00000144432
Ensembl peptide - ENSDARP00000147014
NCBI entrez gene - 335396     See in Manteia.
RefSeq - NM_200867
RefSeq Peptide - NP_957161
swissprot - F8W2Y8
swissprot - Q6TGT9
ZFIN ID - ZDB-GENE-030131-7336
Ensembl - ENSDARG00000029818
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF5AENSGALG00000033259Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf5b / serine/arginine-rich splicing factor 5b / SRSF5* / Q13243* / O35326* / serine/arginine-rich splicing factor 5* / serine and arginine rich splicing factor 5*ENSDARG0000002773464
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678360
srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSDARG0000010529357
srsf6a / serine/arginine-rich splicing factor 6a / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001372955
srsf1a / Q7SXP4 / serine/arginine-rich splicing factor 1a / SRSF1* / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 * / serine and arginine rich splicing factor 1*ENSDARG0000005769140
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784339
srsf9 / serine/arginine-rich splicing factor 9 / Q13242* / Q9D0B0* / serine and arginine rich splicing factor 9*ENSDARG0000000809733


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035585  Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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