ENSDARG00000027734


Danio rerio

Features
Gene ID: ENSDARG00000027734
  
Biological name :srsf5b
  
Synonyms : serine/arginine-rich splicing factor 5b / srsf5b
  
Possible biological names infered from orthology : O35326 / Q13243 / serine and arginine rich splicing factor 5 / serine/arginine-rich splicing factor 5 / SRSF5
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 28869969
Gene end: 28884829
  
Corresponding Affymetrix probe sets: Dr.11695.1.A1_at (Zebrafish Array)   NM_001002610_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122656
Ensembl peptide - ENSDARP00000069997
Ensembl peptide - ENSDARP00000115788
Ensembl peptide - ENSDARP00000123286
NCBI entrez gene - 436883     See in Manteia.
RefSeq - NM_001002610
RefSeq - XM_005160668
RefSeq Peptide - NP_001002610
swissprot - Q5SPH1
swissprot - Q5SPH2
swissprot - Q6DHJ0
swissprot - Q4V988
ZFIN ID - ZDB-GENE-040718-354
Ensembl - ENSDARG00000027734
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF5ENSGALG00000009421Gallus gallus
 SRSF5ENSG00000100650Homo sapiens
 Srsf5ENSMUSG00000021134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf5a / serine/arginine-rich splicing factor 5aENSDARG0000002981858
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678355
srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSDARG0000010529353
srsf6a / serine/arginine-rich splicing factor 6a / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001372952
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784338
srsf1a / Q7SXP4 / serine/arginine-rich splicing factor 1a / SRSF1* / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 * / serine and arginine rich splicing factor 1*ENSDARG0000005769138
srsf9 / serine/arginine-rich splicing factor 9 / Q13242* / Q9D0B0* / serine and arginine rich splicing factor 9*ENSDARG0000000809732


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035585  Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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