ENSMUSG00000021134


Mus musculus

Features
Gene ID: ENSMUSG00000021134
  
Biological name :Srsf5
  
Synonyms : O35326 / serine/arginine-rich splicing factor 5 / Srsf5
  
Possible biological names infered from orthology : Q13243 / serine and arginine rich splicing factor 5
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: C3
Gene start: 80945504
Gene end: 80950507
  
Corresponding Affymetrix probe sets: 10396926 (MoGene1.0st)   10508490 (MoGene1.0st)   1423130_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000105980
Ensembl peptide - ENSMUSP00000105981
Ensembl peptide - ENSMUSP00000105983
Ensembl peptide - ENSMUSP00000105985
Ensembl peptide - ENSMUSP00000131323
Ensembl peptide - ENSMUSP00000138632
NCBI entrez gene - 20384     See in Manteia.
MGI - MGI:98287
RefSeq - XM_006515631
RefSeq - NM_001079694
RefSeq - NM_001079695
RefSeq - NM_001347415
RefSeq - NM_001347416
RefSeq - NM_009159
RefSeq - XM_006515629
RefSeq - XM_006515630
RefSeq Peptide - NP_001334345
RefSeq Peptide - NP_033185
RefSeq Peptide - NP_001073162
RefSeq Peptide - NP_001073163
RefSeq Peptide - NP_001334344
swissprot - O35326
swissprot - Q9D8S5
swissprot - S4R2G3
Ensembl - ENSMUSG00000021134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf5bENSDARG00000027734Danio rerio
 SRSF5ENSGALG00000009421Gallus gallus
 SRSF5ENSG00000100650Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Srsf6 / Q3TWW8 / serine/arginine-rich splicing factor 6 / Q13247* / serine and arginine rich splicing factor 6*ENSMUSG0000001692164
Srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSMUSG0000002891160
Srsf1 / Q6PDM2 / Serine/arginine-rich splicing factor 1 / Q07955* / serine and arginine rich splicing factor 1*ENSMUSG0000001837938
Srsf9 / Q9D0B0 / Serine/arginine-rich splicing factor 9 / Q13242* / serine and arginine rich splicing factor 9*ENSMUSG0000002953829


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035585  Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0009611 response to wounding IDA
 biological_processGO:0032868 response to insulin IEA
 biological_processGO:0032869 cellular response to insulin stimulus IEA
 biological_processGO:0033120 positive regulation of RNA splicing IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0097421 liver regeneration IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043422 protein kinase B binding IEA
 molecular_functionGO:0050733 RS domain binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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