ENSMUSG00000029538


Mus musculus

Features
Gene ID: ENSMUSG00000029538
  
Biological name :Srsf9
  
Synonyms : Q9D0B0 / Serine/arginine-rich splicing factor 9 / Srsf9
  
Possible biological names infered from orthology : Q13242 / serine and arginine rich splicing factor 9
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 115327177
Gene end: 115333080
  
Corresponding Affymetrix probe sets: 10524676 (MoGene1.0st)   1417727_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000031513
Ensembl peptide - ENSMUSP00000121845
Ensembl peptide - ENSMUSP00000147772
NCBI entrez gene - 108014     See in Manteia.
MGI - MGI:104896
RefSeq - XM_011248158
RefSeq - NM_025573
RefSeq Peptide - NP_079849
swissprot - A0A1B0GS29
swissprot - Q9D0B0
swissprot - F6RTE1
Ensembl - ENSMUSG00000029538
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf9ENSDARG00000008097Danio rerio
 SRSF9ENSG00000111786Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Srsf1 / Q6PDM2 / Serine/arginine-rich splicing factor 1 / Q07955* / serine and arginine rich splicing factor 1*ENSMUSG0000001837971
Srsf6 / Q3TWW8 / serine/arginine-rich splicing factor 6 / Q13247* / serine and arginine rich splicing factor 6*ENSMUSG0000001692141
Srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSMUSG0000002891140
Srsf5 / O35326 / serine/arginine-rich splicing factor 5 / Q13243* / serine and arginine rich splicing factor 5*ENSMUSG0000002113435


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034503  SRSF9, RNA recognition motif 1
 IPR034995  SRSF9, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0043279 response to alkaloid IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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