ENSDARG00000008097


Danio rerio

Features
Gene ID: ENSDARG00000008097
  
Biological name :srsf9
  
Synonyms : serine/arginine-rich splicing factor 9 / srsf9
  
Possible biological names infered from orthology : Q13242 / Q9D0B0 / serine and arginine rich splicing factor 9
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 1686975
Gene end: 1697074
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000002874
Ensembl peptide - ENSDARP00000110534
NCBI entrez gene - 405835     See in Manteia.
RefSeq - NM_001312899
RefSeq - NM_212899
RefSeq Peptide - NP_001299828
RefSeq Peptide - NP_998064
swissprot - F1QVC6
ZFIN ID - ZDB-GENE-040426-2397
Ensembl - ENSDARG00000008097
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF9ENSG00000111786Homo sapiens
 Srsf9ENSMUSG00000029538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784362
srsf1a / Q7SXP4 / serine/arginine-rich splicing factor 1a / SRSF1* / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 * / serine and arginine rich splicing factor 1*ENSDARG0000005769160
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678338
srsf5b / serine/arginine-rich splicing factor 5b / SRSF5* / Q13243* / O35326* / serine/arginine-rich splicing factor 5* / serine and arginine rich splicing factor 5*ENSDARG0000002773437
srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSDARG0000010529336
srsf6a / serine/arginine-rich splicing factor 6a / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001372935
srsf5a / serine/arginine-rich splicing factor 5aENSDARG0000002981835


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034503  SRSF9, RNA recognition motif 1
 IPR034995  SRSF9, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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