ENSDARG00000105293


Danio rerio

Features
Gene ID: ENSDARG00000105293
  
Biological name :srsf4
  
Synonyms : serine/arginine-rich splicing factor 4 / srsf4
  
Possible biological names infered from orthology : Q08170 / serine and arginine rich splicing factor 4
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 13410903
Gene end: 13420490
  
Corresponding Affymetrix probe sets: Dr.4165.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133139
Ensembl peptide - ENSDARP00000131436
NCBI entrez gene - 321872     See in Manteia.
RefSeq - NM_199574
RefSeq Peptide - NP_955868
swissprot - A0A0R4IHP9
swissprot - Q802Y1
ZFIN ID - ZDB-GENE-030131-591
Ensembl - ENSDARG00000105293
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000037539Gallus gallus
 SRSF4ENSG00000116350Homo sapiens
 Srsf4ENSMUSG00000028911Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678357
srsf6a / serine/arginine-rich splicing factor 6a / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001372954
srsf5b / serine/arginine-rich splicing factor 5b / SRSF5* / Q13243* / O35326* / serine/arginine-rich splicing factor 5* / serine and arginine rich splicing factor 5*ENSDARG0000002773441
srsf5a / serine/arginine-rich splicing factor 5aENSDARG0000002981840
srsf1a / Q7SXP4 / serine/arginine-rich splicing factor 1a / SRSF1* / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 * / serine and arginine rich splicing factor 1*ENSDARG0000005769132
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784330
srsf9 / serine/arginine-rich splicing factor 9 / Q13242* / Q9D0B0* / serine and arginine rich splicing factor 9*ENSDARG0000000809724


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035585  Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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