ENSDARG00000013729


Danio rerio

Features
Gene ID: ENSDARG00000013729
  
Biological name :srsf6a
  
Synonyms : serine/arginine-rich splicing factor 6a / srsf6a
  
Possible biological names infered from orthology : Q13247 / Q3TWW8 / serine and arginine rich splicing factor 6 / serine/arginine-rich splicing factor 6 / SRSF6
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 4260458
Gene end: 4271984
  
Corresponding Affymetrix probe sets: Dr.9070.1.A1_at (Zebrafish Array)   Dr.9070.2.A1_at (Zebrafish Array)   Dr.9070.3.A1_at (Zebrafish Array)   NM_213466_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094522
NCBI entrez gene - 406775     See in Manteia.
RefSeq - NM_213466
RefSeq Peptide - NP_998631
swissprot - F1QNA5
ZFIN ID - ZDB-GENE-040426-2824
Ensembl - ENSDARG00000013729
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF6ENSGALG00000000990Gallus gallus
 SRSF6ENSG00000124193Homo sapiens
 Srsf6ENSMUSG00000016921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678377
srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSDARG0000010529357
srsf5b / serine/arginine-rich splicing factor 5b / SRSF5* / Q13243* / O35326* / serine/arginine-rich splicing factor 5* / serine and arginine rich splicing factor 5*ENSDARG0000002773443
srsf5a / serine/arginine-rich splicing factor 5aENSDARG0000002981841
srsf1a / Q7SXP4 / serine/arginine-rich splicing factor 1a / SRSF1* / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 * / serine and arginine rich splicing factor 1*ENSDARG0000005769130
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784330
srsf9 / serine/arginine-rich splicing factor 9 / Q13242* / Q9D0B0* / serine and arginine rich splicing factor 9*ENSDARG0000000809724


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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