ENSGALG00000000990


Gallus gallus

Features
Gene ID: ENSGALG00000000990
  
Biological name :SRSF6
  
Synonyms : splicing factor, arginine/serine-rich 6 / SRSF6
  
Possible biological names infered from orthology : Q13247 / Q3TWW8 / serine and arginine rich splicing factor 6 / serine/arginine-rich splicing factor 6
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 112210
Gene end: 116846
  
Corresponding Affymetrix probe sets: GgaAffx.12678.1.S1_at (Chicken Array)   GgaAffx.12678.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001460
Ensembl peptide - ENSGALP00000060437
Ensembl peptide - ENSGALP00000048937
NCBI entrez gene - 419116     See in Manteia.
RefSeq - NM_001030843
RefSeq Peptide - NP_001026014
swissprot - E1C270
swissprot - A0A1L1RNT1
swissprot - A0A1D5P892
Ensembl - ENSGALG00000000990
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf6aENSDARG00000013729Danio rerio
 srsf6bENSDARG00000016783Danio rerio
 SRSF6ENSG00000124193Homo sapiens
 Srsf6ENSMUSG00000016921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRSF5 / serine and arginine rich splicing factor 5 / O35326* / Q13243* / serine/arginine-rich splicing factor 5*ENSGALG0000000942147
SRSF5AENSGALG0000003325946
SRSF1 / serine and arginine rich splicing factor 1 / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 *ENSGALG0000000552528
SRSF4* / Q08170* / serine/arginine-rich splicing factor 4* / serine and arginine rich splicing factor 4*ENSGALG0000003753920


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0010837 regulation of keratinocyte proliferation IEA
 biological_processGO:0045617 negative regulation of keratinocyte differentiation IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0060501 positive regulation of epithelial cell proliferation involved in lung morphogenesis IEA
 biological_processGO:0060548 negative regulation of cell death IEA
 biological_processGO:0061041 regulation of wound healing IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0036002 pre-mRNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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