ENSGALG00000005525


Gallus gallus

Features
Gene ID: ENSGALG00000005525
  
Biological name :SRSF1
  
Synonyms : serine and arginine rich splicing factor 1 / SRSF1
  
Possible biological names infered from orthology : Q07955 / Q6PDM2 / Serine/arginine-rich splicing factor 1
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 8728501
Gene end: 8732117
  
Corresponding Affymetrix probe sets: Gga.4490.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038262
Ensembl peptide - ENSGALP00000063753
Ensembl peptide - ENSGALP00000058610
NCBI entrez gene - 772264     See in Manteia.
RefSeq - NM_001113741
RefSeq Peptide - NP_001107213
swissprot - A0A1L1RY47
swissprot - A0A1L1RIN5
swissprot - F1NQW8
Ensembl - ENSGALG00000005525
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7SXP4ENSDARG00000057691Danio rerio
 SRSF1ENSG00000136450Homo sapiens
 Srsf1ENSMUSG00000018379Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRSF6 / splicing factor, arginine/serine-rich 6 / Q13247* / Q3TWW8* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSGALG0000000099038
SRSF5 / serine and arginine rich splicing factor 5 / O35326* / Q13243* / serine/arginine-rich splicing factor 5*ENSGALG0000000942134
SRSF5AENSGALG0000003325934
SRSF4* / Q08170* / serine/arginine-rich splicing factor 4* / serine and arginine rich splicing factor 4*ENSGALG0000003753916


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000395 mRNA 5"-splice site recognition IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0060048 cardiac muscle contraction IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0035145 exon-exon junction complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0044547 DNA topoisomerase binding IEA
 molecular_functionGO:0050733 RS domain binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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