ENSGALG00000009421


Gallus gallus

Features
Gene ID: ENSGALG00000009421
  
Biological name :SRSF5
  
Synonyms : serine and arginine rich splicing factor 5 / SRSF5
  
Possible biological names infered from orthology : O35326 / Q13243 / serine/arginine-rich splicing factor 5
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 27880050
Gene end: 27884687
  
Corresponding Affymetrix probe sets: Gga.4502.1.S1_at (Chicken Array)   GgaAffx.11878.1.S1_at (Chicken Array)   GgaAffx.11878.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015326
NCBI entrez gene - 423258     See in Manteia.
RefSeq - NM_001031197
RefSeq - XM_015287318
RefSeq - XM_015287319
RefSeq Peptide - NP_001026368
swissprot - E1BY00
Ensembl - ENSGALG00000009421
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf5bENSDARG00000027734Danio rerio
 SRSF5ENSG00000100650Homo sapiens
 Srsf5ENSMUSG00000021134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRSF5AENSGALG0000003325966
SRSF6 / splicing factor, arginine/serine-rich 6 / Q13247* / Q3TWW8* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSGALG0000000099063
SRSF1 / serine and arginine rich splicing factor 1 / Q07955* / Q6PDM2* / Serine/arginine-rich splicing factor 1 *ENSGALG0000000552533
SRSF4* / Q08170* / serine/arginine-rich splicing factor 4* / serine and arginine rich splicing factor 4*ENSGALG0000003753922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr