ENSDARG00000057691


Danio rerio

Features
Gene ID: ENSDARG00000057691
  
Biological name :srsf1a
  
Synonyms : Q7SXP4 / serine/arginine-rich splicing factor 1a / srsf1a
  
Possible biological names infered from orthology : Q07955 / Q6PDM2 / serine and arginine rich splicing factor 1 / Serine/arginine-rich splicing factor 1 / SRSF1
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 16072080
Gene end: 16076518
  
Corresponding Affymetrix probe sets: Dr.25141.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074862
Ensembl peptide - ENSDARP00000115420
Ensembl peptide - ENSDARP00000113721
NCBI entrez gene - 406288     See in Manteia.
RefSeq - XM_005157414
RefSeq - XM_005157415
swissprot - E9QIC5
swissprot - E9QGF8
swissprot - Q7SXP4
ZFIN ID - ZDB-GENE-040426-1950
Ensembl - ENSDARG00000057691
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SRSF1ENSGALG00000005525Gallus gallus
 SRSF1ENSG00000136450Homo sapiens
 Srsf1ENSMUSG00000018379Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NYA0 / srsf1b / serine/arginine-rich splicing factor 1bENSDARG0000001784392
srsf9 / serine/arginine-rich splicing factor 9 / Q13242* / Q9D0B0* / serine and arginine rich splicing factor 9*ENSDARG0000000809758
srsf6b / serine/arginine-rich splicing factor 6b / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001678347
srsf4 / serine/arginine-rich splicing factor 4 / Q08170* / serine and arginine rich splicing factor 4*ENSDARG0000010529346
srsf5b / serine/arginine-rich splicing factor 5b / SRSF5* / Q13243* / O35326* / serine/arginine-rich splicing factor 5* / serine and arginine rich splicing factor 5*ENSDARG0000002773442
srsf6a / serine/arginine-rich splicing factor 6a / SRSF6* / Q3TWW8* / Q13247* / serine/arginine-rich splicing factor 6* / serine and arginine rich splicing factor 6*ENSDARG0000001372941
srsf5a / serine/arginine-rich splicing factor 5aENSDARG0000002981840


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034520  SRSF1, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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