ENSG00000111786


Homo sapiens

Features
Gene ID: ENSG00000111786
  
Biological name :SRSF9
  
Synonyms : Q13242 / serine and arginine rich splicing factor 9 / SRSF9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q24.31
Gene start: 120461668
Gene end: 120469793
  
Corresponding Affymetrix probe sets: 200044_at (Human Genome U133 Plus 2.0 Array)   201698_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449030
Ensembl peptide - ENSP00000229390
Ensembl peptide - ENSP00000474283
NCBI entrez gene - 8683     See in Manteia.
OMIM - 601943
RefSeq - NM_003769
RefSeq Peptide - NP_003760
swissprot - S4R3G0
swissprot - H0YIB4
swissprot - Q13242
Ensembl - ENSG00000111786
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf9ENSDARG00000008097Danio rerio
 Srsf9ENSMUSG00000029538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SRSF1 / Q07955 / serine and arginine rich splicing factor 1ENSG0000013645071
SRSF6 / Q13247 / serine and arginine rich splicing factor 6ENSG0000012419341
SRSF4 / Q08170 / serine and arginine rich splicing factor 4ENSG0000011635040
SRSF5 / Q13243 / serine and arginine rich splicing factor 5ENSG0000010065036


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034503  SRSF9, RNA recognition motif 1
 IPR034995  SRSF9, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006376 mRNA splice site selection TAS
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0006405 RNA export from nucleus TAS
 biological_processGO:0006406 mRNA export from nucleus TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0031124 mRNA 3"-end processing TAS
 biological_processGO:0043279 response to alkaloid IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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