ENSDARG00000029930


Danio rerio

Features
Gene ID: ENSDARG00000029930
  
Biological name :SPDEF
  
Synonyms : SAM pointed domain containing ETS transcription factor / SPDEF
  
Possible biological names infered from orthology : O95238 / Q9WTP3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54280365
Gene end: 54290227
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000050482
NCBI entrez gene - 100003543     See in Manteia.
swissprot - F1QF97
Ensembl - ENSDARG00000029930
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002792Gallus gallus
 SPDEFENSG00000124664Homo sapiens
 SpdefENSMUSG00000024215Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elf2b / E74-like factor 2b (ets domain transcription factor) / ELF2* / Q15723* / E74 like ETS transcription factor 2*ENSDARG0000007962621
etv7 / ets variant 7 / Q9Y603*ENSDARG0000008943419
ehf / ets homologous factor / O70273* / Q9NZC4*ENSDARG0000005211518
elf2a / E74-like factor 2a (ets domain transcription factor) / ELF2* / Q9JHC9* / Q15723* / E74 like ETS transcription factor 2* / ETS-related transcription factor Elf-2 *ENSDARG0000001945918
elf1 / E74-like ETS transcription factor 1 / ELF4* / Q99607* / Q9Z2U4* / E74 like ETS transcription factor 4* / ETS-related transcription factor Elf-4 *ENSDARG0000002075917
elf3 / E74-like factor 3 (ets domain transcription factor, epithelial-specific ) / P78545* / Q3UPW2* / E74 like ETS transcription factor 3* / ETS-related transcription factor Elf-3 *ENSDARG0000007798217


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR003118  Pointed domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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