ENSDARG00000079626


Danio rerio

Features
Gene ID: ENSDARG00000079626
  
Biological name :elf2b
  
Synonyms : E74-like factor 2b (ets domain transcription factor) / elf2b
  
Possible biological names infered from orthology : E74 like ETS transcription factor 2 / ELF2 / ETS-related transcription factor Elf-2 / Q15723 / Q9JHC9
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 13957235
Gene end: 13989643
  
Corresponding Affymetrix probe sets: Dr.2328.1.S1_at (Zebrafish Array)   NM_199219_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094160
Ensembl peptide - ENSDARP00000154068
Ensembl peptide - ENSDARP00000019238
NCBI entrez gene - 387534     See in Manteia.
RefSeq - NM_199219
RefSeq Peptide - NP_954689
swissprot - F1Q8H4
swissprot - F1QPC8
ZFIN ID - ZDB-GENE-031215-1
Ensembl - ENSDARG00000079626
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELF2ENSGALG00000009774Gallus gallus
 ELF2ENSG00000109381Homo sapiens
 Elf2ENSMUSG00000037174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elf2a / E74-like factor 2a (ets domain transcription factor) / ELF2* / Q9JHC9* / Q15723* / E74 like ETS transcription factor 2* / ETS-related transcription factor Elf-2 *ENSDARG0000001945939
elf1 / E74-like ETS transcription factor 1 / ELF4* / Q99607* / Q9Z2U4* / E74 like ETS transcription factor 4* / ETS-related transcription factor Elf-4 *ENSDARG0000002075931
elf3 / E74-like factor 3 (ets domain transcription factor, epithelial-specific ) / P78545* / Q3UPW2* / E74 like ETS transcription factor 3* / ETS-related transcription factor Elf-3 *ENSDARG0000007798211
SPDEF / SAM pointed domain containing ETS transcription factor / O95238*ENSDARG0000002993011
ehf / ets homologous factor / O70273* / Q9NZC4*ENSDARG0000005211510
etv7 / ets variant 7 / Q9Y603*ENSDARG000000894349


Protein motifs (from Interpro)
Interpro ID Name
 IPR000418  Ets domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR022084  Transcription factor Elf, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates transcription of genes involved in BCR signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000087646 runx1 / runt-related transcription factor 1 / Q01196*  / reaction / complex






 

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