ENSDARG00000030402


Danio rerio

Features
Gene ID: ENSDARG00000030402
  
Biological name :twist1a
  
Synonyms : twist1a / twist family bHLH transcription factor 1a
  
Possible biological names infered from orthology : P26687 / Q15672 / Q8WVJ9 / TWIST1 / TWIST2 / twist basic helix-loop-helix transcription factor 1 / twist basic helix-loop-helix transcription factor 2 / twist family bHLH transcription factor 1 / twist family bHLH transcription factor 2
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 2229162
Gene end: 2231188
  
Corresponding Affymetrix probe sets: Dr.8121.1.S1_at (Zebrafish Array)   NM_130984_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043594
Ensembl peptide - ENSDARP00000149582
NCBI entrez gene - 30175     See in Manteia.
RefSeq - NM_130984
RefSeq Peptide - NP_571059
swissprot - Q9PTE3
ZFIN ID - ZDB-GENE-000210-6
Ensembl - ENSDARG00000030402
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TWIST2ENSGALG00000004274Gallus gallus
 Q15672ENSG00000122691Homo sapiens
 Q8WVJ9ENSG00000233608Homo sapiens
 P26687ENSMUSG00000035799Mus musculus
 Twist2ENSMUSG00000007805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
twist1b / twist family bHLH transcription factor 1b / Q8WVJ9* / TWIST1* / TWIST2* / P26687* / Q15672* / twist family bHLH transcription factor 1* / twist family bHLH transcription factor 2*...ENSDARG0000007601081
twist2 / Q15672* / Q8WVJ9* / TWIST1* / P26687* / twist family bHLH transcription factor 2* / twist family bHLH transcription factor 1* / twist basic helix-loop-helix transcription factor 1*...ENSDARG0000007826676
twist3ENSDARG0000001964661
tal1 / O93507 / T-cell acute lymphocytic leukemia 1 / P22091* / P17542* / TAL bHLH transcription factor 1, erythroid differentiation factor*ENSDARG0000001993029
scxa / scleraxis bHLH transcription factor a / SCX* / Q7RTU7* / Q64124* / scleraxis* / scleraxis bHLH transcription factor*ENSDARG0000003569527
tcf15 / transcription factor 15ENSDARG0000006754427
hand2 / heart and neural crest derivatives expressed 2 / P61296* / Q61039* / Heart- and neural crest derivatives-expressed protein 2 *ENSDARG0000000830526
scxb / scleraxis bHLH transcription factor b / SCX* / Q7RTU7* / Q64124* / scleraxis* / scleraxis bHLH transcription factor*ENSDARG0000001163526
si:ch211-246m6.4ENSDARG0000004285725
CABZ01066694.1 / LYL1* / P12980* / P27792* / Protein lyl-1 * / LYL1, basic helix-loop-helix family member*ENSDARG0000011017823
tal2 / T-cell acute lymphocytic leukemia 2 / Q16559* / Q62282* / TAL bHLH transcription factor 2*ENSDARG0000004204122
nhlh2 / nescient helix loop helix 2 / NHLH1* / Q02575* / Q64221* / Q02576* / Q02577* / nescient helix-loop-helix 1*ENSDARG0000002549520


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR015789  Twist-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002040 sprouting angiogenesis IGI
 biological_processGO:0060037 pharyngeal system development IGI
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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