ENSDARG00000035324


Danio rerio

Features
Gene ID: ENSDARG00000035324
  
Biological name :hnrnpl
  
Synonyms : heterogeneous nuclear ribonucleoprotein L / hnrnpl
  
Possible biological names infered from orthology : AC008982.1 / Heteroous nuclear ribonucleoprotein L / P14866 / Q8R081
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 36899691
Gene end: 36911903
  
Corresponding Affymetrix probe sets: Dr.5630.1.S1_at (Zebrafish Array)   NM_201099_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000051183
Ensembl peptide - ENSDARP00000118197
Ensembl peptide - ENSDARP00000153944
NCBI entrez gene - 394074     See in Manteia.
RefSeq - NM_201099
RefSeq Peptide - NP_957393
swissprot - F1QMR5
swissprot - Q7ZW09
ZFIN ID - ZDB-GENE-040426-710
Ensembl - ENSDARG00000035324
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043929Gallus gallus
 AC008982.1ENSG00000268083Homo sapiens
 HNRNPLENSG00000104824Homo sapiens
 HnrnplENSMUSG00000015165Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpl2 / heterogeneous nuclear ribonucleoprotein L2 / Q8R081* / P14866* / HNRNPL* / AC008982.1* / Heteroous nuclear ribonucleoprotein L * / heterogeneous nuclear ribonucleoprotein L*ENSDARG0000005930379
ptbp1b / polypyrimidine tract binding protein 1b / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000003190726
ptbp1a / polypyrimidine tract binding protein 1a / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000001936225
ptbp3 / polypyrimidine tract binding protein 3 / O95758* / Q8BHD7*ENSDARG0000004375725
ptbp2a / polypyrimidine tract binding protein 2a / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000010194724
ptbp2b / polypyrimidine tract binding protein 2b / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000001590123
CABZ01100304.1 / Q8WVV9* / HNRNPLL* / heterogeneous nuclear ribonucleoprotein L like*ENSDARG0000011610118


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR034817  hnRNP-L, RNA recognition motif 4
 IPR035005  hnRNP-L, RNA recognition motif 1
 IPR035008  hnRNP-L, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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