ENSDARG00000031907


Danio rerio

Features
Gene ID: ENSDARG00000031907
  
Biological name :ptbp1b
  
Synonyms : polypyrimidine tract binding protein 1b / ptbp1b
  
Possible biological names infered from orthology : P26599 / polypyrimidine tract binding protein 1 / PTBP1
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 14321113
Gene end: 14342507
  
Corresponding Affymetrix probe sets: Dr.20073.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000039821
Ensembl peptide - ENSDARP00000136574
Ensembl peptide - ENSDARP00000134445
Ensembl peptide - ENSDARP00000120697
Ensembl peptide - ENSDARP00000116727
NCBI entrez gene - 321220     See in Manteia.
RefSeq - NM_001122654
RefSeq - XM_005155938
RefSeq - XM_009305880
RefSeq Peptide - NP_001116126
swissprot - F1QKG2
swissprot - E9QJA3
swissprot - E9QFI7
swissprot - A0A0R4IMK9
swissprot - A0A0R4IKK7
ZFIN ID - ZDB-GENE-030131-9796
Ensembl - ENSDARG00000031907
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTBP1ENSGALG00000001962Gallus gallus
 PTBP1ENSG00000011304Homo sapiens
 Ptbp1ENSMUSG00000006498Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptbp1a / polypyrimidine tract binding protein 1a / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000001936286
ptbp3 / polypyrimidine tract binding protein 3 / O95758* / Q8BHD7*ENSDARG0000004375766
ptbp2b / polypyrimidine tract binding protein 2b / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000001590162
ptbp2a / polypyrimidine tract binding protein 2a / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000010194760
hnrnpl / heterogeneous nuclear ribonucleoprotein L / Q8R081* / P14866* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSDARG0000003532425
hnrnpl2 / heterogeneous nuclear ribonucleoprotein L2 / Q8R081* / P14866* / HNRNPL* / AC008982.1* / Heteroous nuclear ribonucleoprotein L * / heterogeneous nuclear ribonucleoprotein L*ENSDARG0000005930324
CABZ01100304.1 / Q8WVV9* / HNRNPLL* / heterogeneous nuclear ribonucleoprotein L like*ENSDARG000001161019


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR034798  Polypyrimidine tract-binding protein1/2/3, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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