ENSDARG00000015901


Danio rerio

Features
Gene ID: ENSDARG00000015901
  
Biological name :ptbp2b
  
Synonyms : polypyrimidine tract binding protein 2b / ptbp2b
  
Possible biological names infered from orthology : polypyrimidine tract binding protein 2 / PTBP2 / Q91Z31 / Q9UKA9
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 19777146
Gene end: 19795593
  
Corresponding Affymetrix probe sets: Dr.260.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000036256
Ensembl peptide - ENSDARP00000115758
Ensembl peptide - ENSDARP00000124568
NCBI entrez gene - 562434     See in Manteia.
RefSeq - NM_001100007
RefSeq Peptide - NP_001093477
swissprot - F1Q6Q4
swissprot - A5PM68
swissprot - F8W2Y1
ZFIN ID - ZDB-GENE-060810-49
Ensembl - ENSDARG00000015901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTBP2ENSGALG00000005552Gallus gallus
 PTBP2ENSG00000117569Homo sapiens
 Ptbp2ENSMUSG00000028134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptbp2a / polypyrimidine tract binding protein 2a / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000010194778
ptbp1a / polypyrimidine tract binding protein 1a / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000001936267
ptbp1b / polypyrimidine tract binding protein 1b / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000003190765
ptbp3 / polypyrimidine tract binding protein 3 / O95758* / Q8BHD7*ENSDARG0000004375762
hnrnpl2 / heterogeneous nuclear ribonucleoprotein L2 / Q8R081* / P14866* / HNRNPL* / AC008982.1* / Heteroous nuclear ribonucleoprotein L * / heterogeneous nuclear ribonucleoprotein L*ENSDARG0000005930323
hnrnpl / heterogeneous nuclear ribonucleoprotein L / Q8R081* / P14866* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSDARG0000003532423
CABZ01100304.1 / Q8WVV9* / HNRNPLL* / heterogeneous nuclear ribonucleoprotein L like*ENSDARG000001161019


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR034798  Polypyrimidine tract-binding protein1/2/3, RNA recognition motif 2
 IPR034799  PTBP2, RNA recognition motif 3
 IPR035002  PTBP2, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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