ENSDARG00000043757


Danio rerio

Features
Gene ID: ENSDARG00000043757
  
Biological name :ptbp3
  
Synonyms : polypyrimidine tract binding protein 3 / ptbp3
  
Possible biological names infered from orthology : O95758 / Q8BHD7
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 11146321
Gene end: 11261565
  
Corresponding Affymetrix probe sets: Dr.14032.1.A1_at (Zebrafish Array)   Dr.14229.1.S1_at (Zebrafish Array)   Dr.15649.1.A1_at (Zebrafish Array)   Dr.5569.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000040307
Ensembl peptide - ENSDARP00000118637
Ensembl peptide - ENSDARP00000155618
NCBI entrez gene - 798982     See in Manteia.
swissprot - E7FB37
ZFIN ID - ZDB-GENE-091116-1
Ensembl - ENSDARG00000043757
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTBP3ENSGALG00000015669Gallus gallus
 PTBP3ENSG00000119314Homo sapiens
 Ptbp3ENSMUSG00000028382Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptbp1a / polypyrimidine tract binding protein 1a / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000001936274
ptbp1b / polypyrimidine tract binding protein 1b / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000003190771
ptbp2b / polypyrimidine tract binding protein 2b / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000001590164
ptbp2a / polypyrimidine tract binding protein 2a / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000010194763
hnrnpl / heterogeneous nuclear ribonucleoprotein L / Q8R081* / P14866* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSDARG0000003532426
hnrnpl2 / heterogeneous nuclear ribonucleoprotein L2 / Q8R081* / P14866* / HNRNPL* / AC008982.1* / Heteroous nuclear ribonucleoprotein L * / heterogeneous nuclear ribonucleoprotein L*ENSDARG0000005930325
CABZ01100304.1 / Q8WVV9* / HNRNPLL* / heterogeneous nuclear ribonucleoprotein L like*ENSDARG0000011610110


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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