ENSDARG00000101947


Danio rerio

Features
Gene ID: ENSDARG00000101947
  
Biological name :ptbp2a
  
Synonyms : polypyrimidine tract binding protein 2a / ptbp2a
  
Possible biological names infered from orthology : polypyrimidine tract binding protein 2 / PTBP2 / Q91Z31 / Q9UKA9
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 30835929
Gene end: 30862168
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000141288
Ensembl peptide - ENSDARP00000141740
NCBI entrez gene - 541437     See in Manteia.
swissprot - A0A0R4IZG6
swissprot - Q5BLD6
ZFIN ID - ZDB-GENE-050320-141
Ensembl - ENSDARG00000101947
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTBP2ENSGALG00000005552Gallus gallus
 PTBP2ENSG00000117569Homo sapiens
 Ptbp2ENSMUSG00000028134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptbp2b / polypyrimidine tract binding protein 2b / PTBP2* / Q91Z31* / Q9UKA9* / polypyrimidine tract binding protein 2*ENSDARG0000001590182
ptbp1a / polypyrimidine tract binding protein 1a / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000001936268
ptbp1b / polypyrimidine tract binding protein 1b / PTBP1* / P26599* / polypyrimidine tract binding protein 1*ENSDARG0000003190766
ptbp3 / polypyrimidine tract binding protein 3 / O95758* / Q8BHD7*ENSDARG0000004375764
hnrnpl2 / heterogeneous nuclear ribonucleoprotein L2 / Q8R081* / P14866* / HNRNPL* / AC008982.1* / Heteroous nuclear ribonucleoprotein L * / heterogeneous nuclear ribonucleoprotein L*ENSDARG0000005930325
hnrnpl / heterogeneous nuclear ribonucleoprotein L / Q8R081* / P14866* / AC008982.1* / Heteroous nuclear ribonucleoprotein L *ENSDARG0000003532425
CABZ01100304.1 / Q8WVV9* / HNRNPLL* / heterogeneous nuclear ribonucleoprotein L like*ENSDARG0000011610110


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006536  HnRNP-L/PTB
 IPR034798  Polypyrimidine tract-binding protein1/2/3, RNA recognition motif 2
 IPR034800  PTBP2, RNA recognition motif 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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